Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,396,324 – 11,396,440 |
Length | 116 |
Max. P | 0.514159 |
Location | 11,396,324 – 11,396,440 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.28 |
Mean single sequence MFE | -34.94 |
Consensus MFE | -28.84 |
Energy contribution | -29.48 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.30 |
Structure conservation index | 0.83 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11396324 116 - 27905053 CA----CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC ..----................((((((.((((..(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........)))..))))))))))... ( -32.76) >DroSec_CAF1 144092 116 - 1 UA----CAUAUCACAUGCACCCCAGGUGAGCACAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC ..----................((((((.(((((.(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........))))).)))))))))... ( -32.46) >DroSim_CAF1 135147 116 - 1 UA----CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC ..----................((((((.((((..(((.......(((..((((((...(((((..((.(....)))..))))))))))).)))........)))..))))))))))... ( -32.76) >DroEre_CAF1 132333 110 - 1 CA----CAUAUCACAUGCACCACAGGUGAGCA------AUGCUUGCAAAACUGUUCAAAGUGCUCCUGACUAAUGCAUUGGCACGAGCAGGUGGGUAAAUCGUCCUGUUGCCGCCUGUCC ..----...............(((((((.(((------((..........((((((...(((((..((.(....)))..)))))))))))..(((........))))))))))))))).. ( -32.30) >DroYak_CAF1 135043 120 - 1 UAGGUGUAUAUCACUUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGGUAAAUUGUCCUGUUGCCGCCUGUCC ..((((((.......)))))).((((((.((((..(((....(((((...((((((...(((((..((.(....)))..)))))))))))...)))))....)))..))))))))))... ( -44.40) >consensus UA____CAUAUCACAUGCACCCCAGGUGAGCAAAUGGAAUGCUUGCCAAACUGUUCAAAGUGUUCCUGACUAAUGCAUUGGCACGAGCAGGUGGAUAAAUUGUCCUGUUGCCGCCUGUCC ......................((((((.(((...(((....((((((..((((((...(((((..((.(....)))..))))))))))).))).)))....)))...)))))))))... (-28.84 = -29.48 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:51 2006