Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,396,068 – 11,396,182 |
Length | 114 |
Max. P | 0.915397 |
Location | 11,396,068 – 11,396,182 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -40.89 |
Consensus MFE | -29.54 |
Energy contribution | -29.86 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.68 |
Structure conservation index | 0.72 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11396068 114 - 27905053 CACC------CGCUUUCGCAUCCCCAACUCUAUCAUCCAUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU ....------....((((((((((((.(((((((((((((((((((((.....((((((........))))))....)))))))).))).))..)))..))))).))))))))))))... ( -44.80) >DroSec_CAF1 143826 114 - 1 CAGC------CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU ....------....((((((.(((...(((((((((..((((((((((.....((((((........))))))....)))))))))).)))).......)))))...))).))))))... ( -37.21) >DroSim_CAF1 134891 114 - 1 CAGC------CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU ....------....((((((.(((...(((((((((..((((((((((.....((((((........))))))....)))))))))).)))).......)))))...))).))))))... ( -37.21) >DroEre_CAF1 132074 112 - 1 CA-------GCCCUCUUCAAGCCCAAUCCCCGCCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGG-GGUGCGAACUU ((-------.(((((((((((((..........(((..((((((((((.....((((((........))))))....)))))))))).)))....)))))))))).))-).))....... ( -38.24) >DroYak_CAF1 134763 120 - 1 CACCCAGCACCCCUUUUCAAGCCCAAACUGCGCCACCCCUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGCAAUGGCUUGGAGAUGGGGGUGCGAACUU ......(((((((((((((((((.....(((((......(((((((((.....((((((........))))))....)))))))))..)))))..)))))))))..))))))))...... ( -47.00) >consensus CACC______CCCUUUUGCAACCCAAACUCCAUCACCCUUGUUGUCUGUUCUAUUUUGUAUAAUUUAGCGAAAGCGCCAGACGGCGAUGUGAAAUGGCUUGGAGAUGGGGGUGCGAACUU .................................((((((((((.((((..((((((..(((......((....))(((....))).)))..))))))..))))))))))))))....... (-29.54 = -29.86 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:50 2006