Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,395,868 – 11,395,988 |
Length | 120 |
Max. P | 0.852030 |
Location | 11,395,868 – 11,395,988 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.58 |
Mean single sequence MFE | -27.74 |
Consensus MFE | -26.22 |
Energy contribution | -26.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.36 |
Structure conservation index | 0.95 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11395868 120 + 27905053 GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40) >DroSec_CAF1 143608 120 + 1 GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40) >DroSim_CAF1 134673 120 + 1 GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ((......))((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... ( -28.40) >DroEre_CAF1 131838 117 + 1 GAA---CCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCACAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ...---....((((((....(((((..((((..(.....((....))....(((((((((.....................))))))))))..))))..))).)).....)))))).... ( -26.80) >DroYak_CAF1 134532 119 + 1 GGAAC-CCCCGAAGCCUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAGAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ((...-..))(((((.....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).))......))))).... ( -26.70) >consensus GGAACCCCCCGAAGCUUUUUGCCUGUGAAUGCUGAUUACGUAAUUGCAUUUUAGACGUCGCAAAAUUUUCGUACAACAUUUUGGCGUUUACUUCAUUUGCAGCGCCUUUCAGCUUCAAUU ..........((((((....(((((..((((..(.....((....))....(((((((..((((((.((.....)).))))))))))))))..))))..))).)).....)))))).... (-26.22 = -26.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:49 2006