Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,394,600 – 11,394,720 |
Length | 120 |
Max. P | 0.567402 |
Location | 11,394,600 – 11,394,720 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.08 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -21.38 |
Energy contribution | -21.86 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.50 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11394600 120 + 27905053 GGAGACGGGCUAAGUGCAGGAGAGUGAGGAUGUGUUGAAGGGACAACCUCAAGCCGCAGAGUUAAAAAAGCUGUGCUGGGGACACACGAGAAUAUGCAAAUUGAAAGGCAAAUAAAAUUA (....)..(((...((((((....(((((.(((.(.....).))).)))))..))(((.((((.....)))).)))((....))..........))))........)))........... ( -28.20) >DroSec_CAF1 142366 120 + 1 UGUGACGAGCUAAGUGUAGGAGAGUGGGGAUGUGUUGAAGGGACAACCUCAAGCCGCAGAGUUAAAAAAGCUGUGCUGGGGACACACGAGAAUAUGCAAAUUGAAAGGCAAAUAAAAUUA ........(((..((((.((....(((((.(((.(.....).))).)))))..))(((.((((.....)))).))).....)))).(((...........)))...)))........... ( -25.30) >DroSim_CAF1 133435 120 + 1 GGUGACGAGCAAAGUGCAGGAGAGUGAGAAUGUGUUGAAGGGACAACCUCAAGCCGCAGAGUUAAAAAAGCUGUGCUGGGGACACACGAGAAUAUGCAAAUUGAAAGGCAAAUAAAAUUA (....)...(((..((((.....(((.....(.(((..(((.....)))..))))(((.((((.....)))).)))((....))))).......))))..)))................. ( -25.30) >DroEre_CAF1 130654 120 + 1 GGCGACGGGCCAAGUGCAGGAGAGCGAGGAAGUGUUGGAGGGACAACCUCAAGCCGCAGAGUUAAAAAAGCUGUGCUGGGGACACACGAGAGUAUGCAAAUUGAAAGGCAAAUAAAAUUA (((.....)))...((((.............(((((.((((.....))))...(((((.((((.....)))).))).)).)))))((....)).))))...................... ( -31.20) >DroYak_CAF1 133268 120 + 1 GGAGAGUGAGGAUGUGCAGGAGAGUGAGGAUGUGUUGAAGGGACAACCUCAAGCCACAGAGUUAAAAAAGCUGUGCUGGCGACACACGAGAAUAUGCAAAUUGAAAGGCAAAUAAAAUUA ..........(((.((((......(((((.(((.(.....).))).))))).((((((.((((.....)))).)).))))..............)))).))).................. ( -25.60) >consensus GGAGACGGGCUAAGUGCAGGAGAGUGAGGAUGUGUUGAAGGGACAACCUCAAGCCGCAGAGUUAAAAAAGCUGUGCUGGGGACACACGAGAAUAUGCAAAUUGAAAGGCAAAUAAAAUUA ..............(((.((....(((((.(((.(.....).))).)))))..))(((.((((.....))))(((.((....))))).......)))..........))).......... (-21.38 = -21.86 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:48 2006