Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,568,874 – 1,568,977 |
Length | 103 |
Max. P | 0.505010 |
Location | 1,568,874 – 1,568,977 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.68 |
Mean single sequence MFE | -44.92 |
Consensus MFE | -30.88 |
Energy contribution | -31.55 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.26 |
Mean z-score | -1.31 |
Structure conservation index | 0.69 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1568874 103 + 27905053 ACAGCUGAUGCGGGCAGCAGCGCUGCGGUCGGCGUCGGCGUCGUAGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCGG ...((((((((.(((.(((....))).))).))))))))((((....))))..((((..((((...((((((((((......)))))))))).)))).)))). ( -52.20) >DroPse_CAF1 264 97 + 1 ACAGCUGAUGCUGGUGGCGGGGUU------GGUGUGGUCGUCGCAGGGGGAAGCGAGGGAGUCAAUUUGGAUUCAUCGCCUAGGGAAUCCGGCGACGAUUCAG .(((((..(((.....))).))))------).((.(((((((((.(((....((((..(((((......))))).))))........))).))))))))))). ( -35.10) >DroSim_CAF1 183 103 + 1 ACAGCUGAUGCGGGCAGCAGCGCUGCGGUCGGCGUCGGCGUCGUCGCUGGCAGCGAAGGCGUCAAUCUGGACUCGUCGCCACGCGAAUCCGGGGACGAUUCGG ...((((((((.(((.(((....))).))).))))))))((((((..((((.((....)))))).((((((.((((......)))).)))))))))))).... ( -49.90) >DroEre_CAF1 180 97 + 1 ACAGCUGAUGCGGGCAGCAGCGUUGCGGUCGG------CGUCGUCGCUGGCAGCGAGGGCGUUAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCUG ...((((.((....)).)))).((((.(((((------((....))))))).))))(((((((..(((((((((((......))))))))))))))).))).. ( -43.90) >DroYak_CAF1 180 103 + 1 ACAGCUGAUGCGGGCAGCAGCGUUGCAGUCGGCGUCGGCGUCGUCGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAGUCCGGGGACGAUUCGG ...((((((((.(((.((......)).))).))))))))(((.((((.....)))).)))(((...((((((((((......)))))))))).)))....... ( -53.30) >DroPer_CAF1 199 97 + 1 ACAGCUGAUGCUGGUGGCGGGGUU------GGUGUGGUCGUCGCAGGGGGAAGCGAGGGAGUCAAUUUGGAUUCAUCGCCUAGGGAAUCCGGCGACGAUUCAG .(((((..(((.....))).))))------).((.(((((((((.(((....((((..(((((......))))).))))........))).))))))))))). ( -35.10) >consensus ACAGCUGAUGCGGGCAGCAGCGUUGCGGUCGGCGUCGGCGUCGUAGCUGGCAGCGAGGGCGUCAAUCUGGACUCGUCGCCACGCGAAUCCGGGGACGAUUCGG ...((((..(((((((((...)))))....((((....)))).))))...))))(((..((((...((((((((((......)))))))))).)))).))).. (-30.88 = -31.55 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006