Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,394,307 – 11,394,422 |
Length | 115 |
Max. P | 0.915073 |
Location | 11,394,307 – 11,394,422 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -26.66 |
Energy contribution | -27.38 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11394307 115 + 27905053 G-----CCCCCAUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGGCCAAAAGCUUACAUUGUAAGCAAACUAUGUGGAUGAGGGCUGGAGGUGGAUAUAUUCAC (-----(((.((((((((((((.((((.((.....)).)).))(((.....)))....)))))....((((((...)))))).......))))))).)))).....(((((....))))) ( -37.00) >DroSec_CAF1 142045 115 + 1 G-----CCCCCGUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGGCCAAAAGCUUACAUUGUAAGUAAACUAUGUGGAUGAGGACUGGAGGUGGAUAUAUUCAC (-----((((.((((.((((((.((((.((.....)).)).))(((.....)))....))))))...((((((...))))))...............)))).)).)))............ ( -28.40) >DroSim_CAF1 133119 115 + 1 G-----CCCCCGUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGGCCAAAAGCUUACAUUGUAAGCAAACUAUGUGGAUGAGGACUGGAGGUGGAUAUAUUCAC (-----((((.((((.((((((.((((.((.....)).)).))(((.....)))....))))))...((((((...))))))...............)))).)).)))............ ( -30.70) >DroEre_CAF1 130338 114 + 1 ------CCCCCGUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGCCCAAAAGCUUACAUUGUAAGCAAACUAUGUGGAUGAGGGCUGGAGGUGGAUAUACUCAC ------.((((((((((((.((.((((.((.....)).)).))(((.....)))....)).))....((((((...)))))).......))))))).)))...(((.........))).. ( -28.50) >DroYak_CAF1 132952 120 + 1 ACCCGACUCCCGUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGCCCAAAAGCUUACAUUGUAAGCAAACUAUGUGGAUGAGGACUGGAGGUUGAUAUAUUCAC ...(((((((.((((.(.(((..((((((((............(((.....))).............((((((...)))))).))).)))))))).))))).))).)))).......... ( -31.30) >consensus G_____CCCCCGUCCAUGGUCAACACAUGUUAACAACUUGAUGGACGAAAAGUCAAACUGGCCAAAAGCUUACAUUGUAAGCAAACUAUGUGGAUGAGGACUGGAGGUGGAUAUAUUCAC .......(((((((((((((((.((((.((.....)).)).))(((.....)))....)))))....((((((...)))))).......))))))).)))......(((((....))))) (-26.66 = -27.38 + 0.72)
Location | 11,394,307 – 11,394,422 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -27.20 |
Energy contribution | -27.08 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.66 |
Structure conservation index | 0.85 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11394307 115 - 27905053 GUGAAUAUAUCCACCUCCAGCCCUCAUCCACAUAGUUUGCUUACAAUGUAAGCUUUUGGCCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGAUGGGGG-----C (((........))).....(((((((((((((.(((((((.......)))))))..))........(((.....))).........((((((....))))))..))))))))))-----) ( -33.80) >DroSec_CAF1 142045 115 - 1 GUGAAUAUAUCCACCUCCAGUCCUCAUCCACAUAGUUUACUUACAAUGUAAGCUUUUGGCCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGACGGGGG-----C .............(((((((((.....(((...(((((((.......)))))))..))).......))))....((((((......((((((....)))))).)))))))))))-----. ( -31.00) >DroSim_CAF1 133119 115 - 1 GUGAAUAUAUCCACCUCCAGUCCUCAUCCACAUAGUUUGCUUACAAUGUAAGCUUUUGGCCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGACGGGGG-----C .............(((((((((.....(((...(((((((.......)))))))..))).......))))....((((((......((((((....)))))).)))))))))))-----. ( -31.00) >DroEre_CAF1 130338 114 - 1 GUGAGUAUAUCCACCUCCAGCCCUCAUCCACAUAGUUUGCUUACAAUGUAAGCUUUUGGGCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGACGGGGG------ .............(((((.((((..........(((((((.......)))))))...)))).............((((((......((((((....)))))).)))))))))))------ ( -32.12) >DroYak_CAF1 132952 120 - 1 GUGAAUAUAUCAACCUCCAGUCCUCAUCCACAUAGUUUGCUUACAAUGUAAGCUUUUGGGCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGACGGGAGUCGGGU ............((((..........((((...(((((((.......)))))))..))))......(((.(..(((((((......((((((....)))))).)))))))..)))))))) ( -32.60) >consensus GUGAAUAUAUCCACCUCCAGUCCUCAUCCACAUAGUUUGCUUACAAUGUAAGCUUUUGGCCAGUUUGACUUUUCGUCCAUCAAGUUGUUAACAUGUGUUGACCAUGGACGGGGG_____C .............(((((.........(((...(((((((.......)))))))..)))...............((((((......((((((....)))))).)))))))))))...... (-27.20 = -27.08 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:47 2006