Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,393,188 – 11,393,297 |
Length | 109 |
Max. P | 0.561031 |
Location | 11,393,188 – 11,393,297 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.77 |
Mean single sequence MFE | -36.44 |
Consensus MFE | -26.46 |
Energy contribution | -26.62 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.561031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11393188 109 + 27905053 GAUUUCUGGUGGCGUUUUUUGCGCUGUGGGAAAGGACAUUUGGCUAAGCUAAUGGGUUCGACUGGAGCCGGGAAACCAU------CGAAAGAUGUUUC-----GUGUUGAGGUUGGUUCU ..(((((.(..((((.....))))..).)))))((((..(((((...))))).((.((((((((((((.((....))((------(....))))))))-----).)))))).)).)))). ( -39.10) >DroSec_CAF1 140946 109 + 1 GAUUUCUGGUGGCGUUUUUUGCGCUGUGGGAAAGGACACUUGGCUAAGCUAAUGGGUUCGACUGGAGCCGGAAAACCAU------CGAAAGAUGUUUC-----GUGUUGAGGUCGGUUGU ..(((((.(..((((.....))))..).)))))((((..(((((...)))))...))))((((..((((((((...(((------(....))))))))-----).)))..))))...... ( -38.40) >DroSim_CAF1 132003 109 + 1 GAUUUCUGGUGGCGUUUUUUGCGCUGUGGGAAAGGACAUUUGGCUAAGCUAAUGGGUUCGACUGGAGCCGGAAAACCAU------CGAAAGAUGUUUC-----GUGUUGAGGUUGGUUCU ..(((((.(..((((.....))))..).)))))((((..(((((...)))))......(((((..((((((((...(((------(....))))))))-----).)))..))))))))). ( -36.90) >DroEre_CAF1 129277 118 + 1 GAUUUCUGGUGGCGUUUUUUGCGCUGUGGGAAAGGACAUUUGGCUUAGCUAAUGGCUUCGACUGGAGCCGGGA-ACCGUCGAUGUCGAAAGAUGUUUCGAGUCGUGUUGAGGUCGGUU-U ..(((((.(..((((.....))))..).))))).(((.((..((........(((((((....))))))).((-..((..((((((....)))))).))..))..))..)))))....-. ( -39.40) >DroYak_CAF1 131843 113 + 1 GAUUUCUGGUGCCGUUUUUUGCGCUGUGGGAAAGGACAUUUGGCUAAGCUAAUGGGUUCGACUGGAGCCGGGA-ACCAU------GGAAAGAUGUUUCGUGUCGUGUUGAGGUCGGUUUU ((((((.(((((........)))))..((.(..((((((((..(((.(....(.(((((.....))))).)..-..).)------))..))))))))..).)).....))))))...... ( -28.40) >consensus GAUUUCUGGUGGCGUUUUUUGCGCUGUGGGAAAGGACAUUUGGCUAAGCUAAUGGGUUCGACUGGAGCCGGGAAACCAU______CGAAAGAUGUUUC_____GUGUUGAGGUCGGUUCU ..(((((.(..((((.....))))..).)))))((((..(((((...)))))...))))((((..((((((....)).........((((....)))).....).)))..))))...... (-26.46 = -26.62 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:45 2006