Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,391,785 – 11,391,883 |
Length | 98 |
Max. P | 0.532237 |
Location | 11,391,785 – 11,391,883 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 85.45 |
Mean single sequence MFE | -18.63 |
Consensus MFE | -18.60 |
Energy contribution | -18.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | 0.26 |
Structure conservation index | 1.00 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11391785 98 + 27905053 AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAGACACACACACUCACACACUACAUAUACUC ..........(((.(((..((((((((((.((.....(((....))).....)).......(........).....)))))...)))))..))).))) ( -18.70) >DroSec_CAF1 139593 79 + 1 AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC-------------------ACAUAUACUC ..(((((((((......(((.....)))((((.......)))).)))))))))................-------------------.......... ( -18.60) >DroSim_CAF1 130657 79 + 1 AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC-------------------ACAUAUACUC ..(((((((((......(((.....)))((((.......)))).)))))))))................-------------------.......... ( -18.60) >consensus AACUCCUUUAGAGAAUGGCUAGUGGAGUGACCGAAGACAGGUCCCUGGAGGAGGACAAGACGGCAGCAC___________________ACAUAUACUC ..(((((((((......(((.....)))((((.......)))).)))))))))............................................. (-18.60 = -18.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:44 2006