Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,391,353 – 11,391,464 |
Length | 111 |
Max. P | 0.980716 |
Location | 11,391,353 – 11,391,464 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.11 |
Mean single sequence MFE | -23.63 |
Consensus MFE | -19.30 |
Energy contribution | -20.74 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.82 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11391353 111 - 27905053 ---------CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUACACA ---------..((((((((.((.(((......))).)).))))))))...(((((((..(((((.......)))))......................(....).........))))))) ( -25.60) >DroSec_CAF1 139162 105 - 1 ---------------CAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA ---------------........(((......)))...((..(((((..(((((.(((.((..(((((.................))))))).))).)).)))..)))))..))...... ( -19.33) >DroSim_CAF1 130265 105 - 1 ---------------CAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA ---------------........(((......)))...((..(((((..(((((.(((.((..(((((.................))))))).))).)).)))..)))))..))...... ( -19.33) >DroEre_CAF1 127509 114 - 1 CCAUCCC--CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCGAAAAUCCCACACUCAACUCGUCAUCAU----CCCCUCCACA .......--..((((((((.((.(((......))).)).))))))))....(((((((((((((.......)))))..))).....)))))...............----.......... ( -25.50) >DroYak_CAF1 129939 116 - 1 ACAUCCACACAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAU----CCCCUCCACA .....((((((((((((((.((.(((......))).)).))))))))...))))))...(((((.......)))))..............................----.......... ( -28.40) >consensus _________CAUCCACAGCCAUCGACAACAUCGUCAAUUGUUGUGGAAAAUGUGUGUUUAGCCUGUGGACAAGGCUCCAAAAAUCCCACACUCAACUCGUCAUCAUCCAUCCCAUCCACA ...........((((((((.((.(((......))).)).))))))))....(((((((((((((.......)))))..))).....)))))............................. (-19.30 = -20.74 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:43 2006