Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,389,581 – 11,389,696 |
Length | 115 |
Max. P | 0.990026 |
Location | 11,389,581 – 11,389,696 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.41 |
Mean single sequence MFE | -33.26 |
Consensus MFE | -31.78 |
Energy contribution | -32.18 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.96 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11389581 115 + 27905053 UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGGCAAACUUGAAUUGUUUGAGUGCCCGGGGCAGCGGUUCACAUUUCGAGUGAAUCCUCGGCU----- .........................((.((((.((((((((((.(((.(((((((...(((..(.....)..)))..)))))).)....)))...)))))))))).)))).))..----- ( -38.00) >DroSec_CAF1 137349 115 + 1 UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGACAAACUUGAAUUGUUUGAGUGCCCGGGGCAGCGGUUCACAUUUCAAGUGAAUCCUCGGCA----- .........................((.((((.(((((.((((.(.((...(((.(((((.......)))))..((((...)))).))).)).).)))).))))).)))).))..----- ( -28.80) >DroSim_CAF1 128451 115 + 1 UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGACAAACUUGAAUUGUUUGAGUGCCCGGGGCAGCGGUUCACAUUUCGAGUGAAUCCUCGGCA----- .........................((.((((.((((((((((.(.((...(((.(((((.......)))))..((((...)))).))).)).).)))))))))).)))).))..----- ( -34.70) >DroEre_CAF1 125849 115 + 1 UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGACAAACUUGAAUUGUUUGAGUGCCCGGAGCAGCGGUUCACAUUUCGAGUGAAUCCUCGGCU----- .........................((.((((.((((((((((.(.((...(((.(((((.......)))))..(((.....))).))).)).).)))))))))).)))).))..----- ( -32.50) >DroYak_CAF1 128163 120 + 1 UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGACAAACUUGAAUUGUUUGAGUGCCCGGGGCAGCGGUUCACAUUUCGAGUGAAUCCUCGACUGCUCU ..........................(.((((.((((((((((.(.((...(((.(((((.......)))))..((((...)))).))).)).).)))))))))).)))).)........ ( -32.30) >consensus UCAAAUUCCAUUAUGCUCACACCUUCCAAGGAAUCACUCGAGAAGAGAUCCCCGACAAACUUGAAUUGUUUGAGUGCCCGGGGCAGCGGUUCACAUUUCGAGUGAAUCCUCGGCU_____ .........................((.((((.((((((((((.(.((...(((.(((((.......)))))..(((.....))).))).)).).)))))))))).)))).))....... (-31.78 = -32.18 + 0.40)
Location | 11,389,581 – 11,389,696 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.41 |
Mean single sequence MFE | -37.46 |
Consensus MFE | -37.66 |
Energy contribution | -37.02 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.54 |
Structure conservation index | 1.01 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11389581 115 - 27905053 -----AGCCGAGGAUUCACUCGAAAUGUGAACCGCUGCCCCGGGCACUCAAACAAUUCAAGUUUGCCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA -----..(((((((.((((((((...(((...)))..((((((.....(((((.......)))))))))))........)))))))).)))))))...(((....)))............ ( -40.40) >DroSec_CAF1 137349 115 - 1 -----UGCCGAGGAUUCACUUGAAAUGUGAACCGCUGCCCCGGGCACUCAAACAAUUCAAGUUUGUCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA -----..(((((((.((((((((...(((...)))..((((((.....(((((.......)))))))))))........)))))))).)))))))...(((....)))............ ( -36.00) >DroSim_CAF1 128451 115 - 1 -----UGCCGAGGAUUCACUCGAAAUGUGAACCGCUGCCCCGGGCACUCAAACAAUUCAAGUUUGUCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA -----..(((((((.((((((((...(((...)))..((((((.....(((((.......)))))))))))........)))))))).)))))))...(((....)))............ ( -38.10) >DroEre_CAF1 125849 115 - 1 -----AGCCGAGGAUUCACUCGAAAUGUGAACCGCUGCUCCGGGCACUCAAACAAUUCAAGUUUGUCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA -----..(((((((.((((((((...(.((.((.((((.....)))..(((((.......)))))..).)).)).)...)))))))).)))))))...(((....)))............ ( -36.30) >DroYak_CAF1 128163 120 - 1 AGAGCAGUCGAGGAUUCACUCGAAAUGUGAACCGCUGCCCCGGGCACUCAAACAAUUCAAGUUUGUCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA ...((..(((((((.((((((((...(((...)))..((((((.....(((((.......)))))))))))........)))))))).)))))))...)).................... ( -36.50) >consensus _____AGCCGAGGAUUCACUCGAAAUGUGAACCGCUGCCCCGGGCACUCAAACAAUUCAAGUUUGUCGGGGAUCUCUUCUCGAGUGAUUCCUUGGAAGGUGUGAGCAUAAUGGAAUUUGA .......(((((((.((((((((...(((...)))..((((((.....(((((.......)))))))))))........)))))))).)))))))...(((....)))............ (-37.66 = -37.02 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:42 2006