Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,388,942 – 11,389,042 |
Length | 100 |
Max. P | 0.770245 |
Location | 11,388,942 – 11,389,042 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -38.13 |
Consensus MFE | -35.72 |
Energy contribution | -36.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.91 |
Structure conservation index | 0.94 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11388942 100 + 27905053 AGAGAGGGAAAGAGUGGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUGUGUCCUGCUGACUGGCUGGUAUCCAUGCUCCAGCUCCUGCUCC .(((.((((..((((((..(((((((....)))))))..))......((((..((((.(((.....)))))))..))))....))))....)))).))). ( -37.70) >DroSec_CAF1 136713 100 + 1 AGAGGGGGAAAGAGUCGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC .(((.((((..(((.(((((((((((....)))))))..........((((..((((.(((.....)))))))..)))).)))))))....)))).))). ( -39.20) >DroSim_CAF1 127822 100 + 1 AGAGAGGGAAAGAGUGGAGUGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC .(((.((((..(..((((((((((((....))))))...........((((..((((.(((.....)))))))..))))....)))))).))))).))). ( -37.50) >consensus AGAGAGGGAAAGAGUGGAGAGUUGGGAUUUCCCGGCUUGCCUUUUAAAUGCUGGCUAUGUCCUGCUGACUGGCUGGUAUCCUUGCUCCAGCUCCUGCUCC .(((.((((..((((((.((((((((....)))))))).))......((((..((((.(((.....)))))))..))))....))))....)))).))). (-35.72 = -36.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:40 2006