Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,387,386 – 11,387,506 |
Length | 120 |
Max. P | 0.559038 |
Location | 11,387,386 – 11,387,506 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -22.40 |
Energy contribution | -22.68 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11387386 120 - 27905053 GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACGCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA ((((..(((((..((((....)).....(((...(....)...))))).......((((.((((....((...(((((.......))))).)).....)))).))))))))))))).... ( -27.80) >DroSec_CAF1 135143 120 - 1 GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGCCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA (((((((..((....(((...........(((..(....).))).((((.((....))..))))..))).((((((((.......))))).)))....))...))))))).......... ( -26.10) >DroSim_CAF1 126261 120 - 1 GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA ((((..(((((..((((....)).....(((...(....)...))))).......((((.((((....((...(((((.......))))).)).....)))).))))))))))))).... ( -28.00) >DroEre_CAF1 123663 114 - 1 GGCAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACA------AAGAAAACUGCUGGCAAGACGGUGCUCGGAAAAACGCCGGGAUGCAGAAGCCAGGAGUGCUUGUGUUCCCA (((.(((.((((..((((..........(((...(....)...------))).....((....)).)))).)))).))).....)))((((.(((.(((((....).)))).))))))). ( -33.30) >DroYak_CAF1 125889 114 - 1 GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAACGAAAGACA------AAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAGGAGAGUUUGUGUUCUCA .........((((((.............(((...(....)...------)))....((((((((....((...(((((.......))))).)).....)))))))).))))))....... ( -32.20) >consensus GACAUUCAAGCAAGCGUCAAAACAAAAACUUGAGCGAAAGACAAAGGCAAAGAAAACUCCUGGCAAGACAGUGCUCGGAAAAACCCCGGGAUGCAGAAGCCAAGAGUGUUUGUGUUCUCA .........((((((...................(....)...............((((.((((....((...(((((.......))))).)).....)))).))))))))))....... (-22.40 = -22.68 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:35 2006