Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,387,091 – 11,387,202 |
Length | 111 |
Max. P | 0.935411 |
Location | 11,387,091 – 11,387,202 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.19 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -19.84 |
Energy contribution | -19.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.36 |
Structure conservation index | 0.96 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935411 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11387091 111 - 27905053 -------UAUCUCCUCACUUAACCGCACUUUUUUUGUGGCUCGUUGCCAUUACUUAAUUGAACUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUUCGGACCCGACUCUU-- -------...............(((((.((.....(((((.....))))).....)).))........(((((.((........)).)))))..)))......(((....))).....-- ( -17.80) >DroSec_CAF1 134840 113 - 1 -------UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUUCG -------...............((((((.....)))))).(((...((....................(((((.((........)).)))))...(((....)))))...)))....... ( -21.90) >DroSim_CAF1 125960 113 - 1 -------UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUUCG -------...............((((((.....)))))).(((...((....................(((((.((........)).)))))...(((....)))))...)))....... ( -21.90) >DroEre_CAF1 123372 111 - 1 -------UAUCUGCCCUCCUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGCUCCCGACUCUU-- -------...............((((((.....))))))...((((......................(((((.((........)).)))))..((((....))))....))))....-- ( -21.00) >DroYak_CAF1 125580 118 - 1 GUGCUAGUAUCUCCACACCUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCUGUUCCCGACUCUU-- ((((....................)))).....(((((((.....)))).)))......((.(((...(((((.((........)).))))).(((((....)))))...))).))..-- ( -20.35) >consensus _______UAUCUCCUCACUUAACCGCACUUUUUGUGUGGCUCGUUGCCAUUACUUAAUUGAAUUGACUGCAAAUACUUUCCUUUGUUUUUGCCACGGAUUUUUCCGGACCCGACUCUU__ ......................((((((.....))))))...((((......................(((((.((........)).)))))..((((....))))....))))...... (-19.84 = -19.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:34 2006