Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,555,639 – 1,555,730 |
Length | 91 |
Max. P | 0.727178 |
Location | 1,555,639 – 1,555,730 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -17.10 |
Energy contribution | -19.10 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.81 |
Structure conservation index | 0.73 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.727178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1555639 91 + 27905053 CGAUUUUGGAUGGGUCAGGAAAAAAGGGUGCACCUUUUGCCCUUUAUGGGAUAAAAUAGUUUGCAAAAAUUAUAUCAUAAA-AAUCGAAGAC (((((((..((((...(((..((((((.....))))))..)))............(((((((....))))))).)))).))-)))))..... ( -20.40) >DroSec_CAF1 57177 92 + 1 CGAUUUUGGAUGGGUCAGGCCGAAAGGGUGCACCUUUUGCCCUUUUUGGGAUCAAAUAGUUUGCAAAAAUGAUCUCAUAAAAAAGCAAAGAU .(.((((..((((((((((.(((((((.....))))))).))((((((.((.(.....).)).))))))))))).)))..)))).)...... ( -23.10) >DroSim_CAF1 57767 92 + 1 CGAUUUUGGAUGGGUCAGGCCGAAAGGGUGCACCUUUUGCCCUUUUUGGGAUCAAAUAGUUUGCAAAAAUGAUCUUAUAAAAAAGCAAAGAC ...(((((...((((((((.(((((((.....))))))).))((((((.((.(.....).)).))))))))))))..))))).......... ( -22.00) >DroYak_CAF1 52543 91 + 1 GGAUUUGGGAUGGGUCAGGCCAAAAGGGUGCACCUUUGGCCCUUCUUG-GAUAACACAGUUUGCAAAAAUGAUCCCAUAAAAAAUCUAAGAA ((((((...(((((((((((((((.((.....)))))))))....(((-.......)))..........))).)))))...))))))..... ( -27.80) >consensus CGAUUUUGGAUGGGUCAGGCCAAAAGGGUGCACCUUUUGCCCUUUUUGGGAUAAAAUAGUUUGCAAAAAUGAUCUCAUAAAAAAGCAAAGAC .((((((..((((((((((.(((((((.....))))))).))((((((.((.........)).))))))))).)))))..))))))...... (-17.10 = -19.10 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006