Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,385,887 – 11,385,999 |
Length | 112 |
Max. P | 0.500000 |
Location | 11,385,887 – 11,385,999 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -33.33 |
Consensus MFE | -25.26 |
Energy contribution | -25.98 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.09 |
Mean z-score | -1.51 |
Structure conservation index | 0.76 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11385887 112 - 27905053 AAGCAUUAGGGUAAGUAUUGCCGUGGUGGAGAGAA-------GGGUGUGGC-AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG ...(((((((.(((((.(((((..(.(........-------.).)..)))-))..(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -28.30) >DroSec_CAF1 133646 112 - 1 AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA-------GGGUGUGGC-AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG ...(((((((.(((((.((((((((.((.......-------)).))))))-))..(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -34.70) >DroSim_CAF1 124764 112 - 1 AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA-------GGGUGUGGC-AAAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAGUUACUGGG ...(((((((.(((((.((((((((.((.......-------)).))))))-))..(((..((((........))))...))))))))))))))).(((((((((...)))))..)))). ( -34.80) >DroEre_CAF1 122136 111 - 1 AAGCAUUAGGGCCAGUAUUGCCAUGGUCGAGGGGC-------UGGUGUG--CAAGGGGAGAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG ...........((((((..((((..(((....)))-------))))(((--((((......((((........)))).((.(((((.....)))))))...))))))).....)))))). ( -32.70) >DroYak_CAF1 124326 120 - 1 AAGCAUUAGGGUAAGUAUUGCCAUGGCCGAGGGGGGAGUGGAGGGUGUGGCGAGGGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG ...(((((((.(((((.((((((((.((..............)).))))))))...(((..((((........))))...))))))))))))))).((((..((......))...)))). ( -36.14) >consensus AAGCAUUAGGGUAAGUAUUGCCAUGGUCGAGGGGA_______GGGUGUGGC_AGAGGGAAAGCUGAGAUAUGGCAGCAGGUCCAUUUACCUGAUGGCCAGAUUUGUACUAAAUUACUGGG ...(((((((.(((((...((((((.((..............)).)))))).....(((..((((........))))...))))))))))))))).((((..((......))...)))). (-25.26 = -25.98 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:31 2006