Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,384,095 – 11,384,215 |
Length | 120 |
Max. P | 0.808514 |
Location | 11,384,095 – 11,384,215 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -28.76 |
Consensus MFE | -27.98 |
Energy contribution | -28.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.97 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11384095 120 + 27905053 AACAAGUUUGAGUUUGUUUUCAUCUUUGUGGGCGAAAAUAAUACAAGGCGCGCCUUUGGCUGCUUUAUUAUUAACCAAGGUAAAUAGCAAAAGGGCUAACACACAAAAAGGUAGCUGCCA .(((((..((((......))))..))))).(((...........((((....)))).(((((((((.......((....))...((((......)))).........)))))))))))). ( -28.60) >DroSec_CAF1 131818 119 + 1 AACAAGUUUGAGUUUGUUUUCAUCUUUGUGGGCGAAAAUAAUACAAGGCUCGCCUUUGGCUGCUUUAUUAUUAACCAAGGUAAAUAGCAAAAGGGCUAACACA-AAAAAGGUAGCUGCCA .(((((..((((......))))..))))).(((...........((((....)))).(((((((((.......((....))...((((......)))).....-...)))))))))))). ( -28.60) >DroSim_CAF1 122921 120 + 1 AACAAGUUUGAGUUUGUUUUCAUCUUUGUGGGCGAAAAUAAUACAAGGCGCGCCUUUGGCUGCUUUAUUAUUAACCAAGGUAAAUAGCAAAAGGGCUAACACACAAAAAGGUAGCUGCCA .(((((..((((......))))..))))).(((...........((((....)))).(((((((((.......((....))...((((......)))).........)))))))))))). ( -28.60) >DroEre_CAF1 119278 120 + 1 AACAAGUUUGAAUUUGUUUUCAUCUUUGUGGGCGAAAAUAAUACAAGGCGCGCCUUUGGCUGCUUUAUUAUUAACCAAGGCAAAUAGCAAAAGGGCUAACGUACAAAAAGGUAGCUGCCA .(((((..((((......))))..))))).(((...........((((....)))).(((((((((........((...((.....))....))((....)).....)))))))))))). ( -29.20) >DroYak_CAF1 122028 120 + 1 AACAAGUUUGAGUUUGUUUUCAUCUUUGUGGGCGAAAAUAAAACAAGGCGCGCCUUUGGCUGCUUUAUUAUUAACCAAGGUAAAUAGCAAAAGGGCUAACGUACAAAAAGGUAGCUGCCA .......(((..(((((((((..((....))..))))))))).)))(((((((((((...((((...(((((......)))))..)))).)))))).....(((......))))).))). ( -28.80) >consensus AACAAGUUUGAGUUUGUUUUCAUCUUUGUGGGCGAAAAUAAUACAAGGCGCGCCUUUGGCUGCUUUAUUAUUAACCAAGGUAAAUAGCAAAAGGGCUAACACACAAAAAGGUAGCUGCCA .(((((..((((......))))..))))).(((...........((((....)))).(((((((((.......((....))...((((......)))).........)))))))))))). (-27.98 = -28.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:26 2006