Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,379,858 – 11,379,965 |
Length | 107 |
Max. P | 0.942450 |
Location | 11,379,858 – 11,379,965 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -45.40 |
Consensus MFE | -34.62 |
Energy contribution | -35.12 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.55 |
Structure conservation index | 0.76 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11379858 107 - 27905053 AACAUUUCGAGCUGGCAUAUUUAUGGGAUGUGCUGGGAGGCGUCUCACCUUGCCUUCCUGACCUGGGCUUGGCCUGGG----------CUUGUGGCCAGGGUUCUGGCCCUGGUUUU .......(((((.((((((((.....))))))))((((((((........))))))))....(..(((...)))..))----------)))).(((((((((....))))))))).. ( -47.10) >DroSec_CAF1 127527 107 - 1 AACAUUUCAAGCUGGCAUAUUUAUGAUAUGAGCUGGGAGGCAUCUCACCUUGCCUUCCUGACCUGGGCUUGGCCUGGG----------CUUGUGGGCAGGGUUCUGGCCCUGGUUUU .........((((..((((((...))))))))))((((((((........)))))))).((((.(((((.(((((..(----------((....))).)))))..))))).)))).. ( -42.40) >DroSim_CAF1 118533 107 - 1 AACAUUUCGAGCUGGCAUAUUUAUGGUAUGAGCUGGGAGGCAUCUCACCUUGCCUUCCUGACCUGGGCUUGGCCUGGG----------CUUGUGGACAGGGUUCUGGCCCUGGUUUU .........((((..(((((.....)))))))))((((((((........)))))))).((((.(((((.(.((((..----------(....)..)))).)...))))).)))).. ( -40.90) >DroYak_CAF1 117702 117 - 1 AACAUCUCGAGCUGGCAUAUUUAUGGGAUGAGCCGAGAGGCGUCUCACCUUGCCUUCCUGACCUGGGCUUGGUCUGGCCUGGCCGGGGCUUGUGGCCCUGGUUUUGGCCCGGGUUUU .............((((......((((((..(((....)))))))))...)))).....((((((((((.((.....)).(((((((((.....)))))))))..)))))))))).. ( -51.20) >consensus AACAUUUCGAGCUGGCAUAUUUAUGGGAUGAGCUGGGAGGCAUCUCACCUUGCCUUCCUGACCUGGGCUUGGCCUGGG__________CUUGUGGCCAGGGUUCUGGCCCUGGUUUU ..((..((((((((((.((((.....)))).)))((((((((........)))))))).......)))))))..)).................(((((((((....))))))))).. (-34.62 = -35.12 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:13 2006