Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,377,255 – 11,377,375 |
Length | 120 |
Max. P | 0.936182 |
Location | 11,377,255 – 11,377,375 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -27.66 |
Energy contribution | -27.62 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.56 |
Structure conservation index | 0.89 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11377255 120 - 27905053 UAUUUUAAGUUUCAGUCUGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUUGAAGCUCUGGAUGUCAAGGUUGUUGCAAUG ..............(((((.(.....).))))).....(((((.(((....((.(((((.(((((((.....(((((....)))))....))))))).)))))))....))).))))).. ( -34.40) >DroSec_CAF1 124897 120 - 1 UAUUUUAUGUUUCAGUCGGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUUGAAGCCUUGGAUGUCAAGGUUGUUGCCAUG ..................((((((((((((.........(((.((.....)).)))..(((((((((.....(((((....)))))....)))).))))).)))))))))....)))... ( -27.00) >DroSim_CAF1 115901 120 - 1 UAUUUUAAGUUUCAGUCGGGCACUUUGGCGGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUCGAAGCUCUGGAUGUCAAAGUUGUUGCCAUG ..............(((((.....))))).(((((((((((..((.....)).((((((.(((((((.....(((((....)))))....))))))).))))))))))..)))))))... ( -32.40) >DroEre_CAF1 112450 120 - 1 UAUUUUAAGUUUCAGACGGGCACUUUGGCAGGCAAUAUCUGCACCAAAAAGGAGCAUCCCGAGUUCCCAUCAGAUAUAUUUAUAUCCUUCGAAGCUCUAAAUGUCAAGGUUAUUGCCAUG (((((..((((((.((.(((.((((.((((((.....))))).((.....))......).)))).))).)).(((((....)))))....))))))..)))))....(((....)))... ( -29.40) >DroYak_CAF1 114990 120 - 1 UAAUUUAAGUUUCAGUCGGGCACUUUGGCAGGCAAUAUCUGUACCAAAAAGGAGCAUCCCGAGUUUCCAUCAGAUAUAUUCAUAUCCUUCGAGGCUCUGGAUGUCAAGGUGAUAGCCAUG .................((.((((((((((((.....))))).((.....)).((((((.(((((((.....(((((....)))))....))))))).)))))))))))))....))... ( -32.70) >consensus UAUUUUAAGUUUCAGUCGGGCACUUUGGCAGGCAAUAUUUGUACCAAAAAGGAACAUCCCGAGUUUCCAUCCGAUAUAUUUAUAUCCUUCGAAGCUCUGGAUGUCAAGGUUGUUGCCAUG ..................((((((((((((.........(((.((.....)).)))(((.(((((((.....(((((....)))))....))))))).))))))))))))....)))... (-27.66 = -27.62 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:10 2006