Locus 424

Sequence ID 3R_DroMel_CAF1
Location 1,552,266 – 1,552,368
Length 102
Max. P 0.557336
window694

overview

Window 4

Location 1,552,266 – 1,552,368
Length 102
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -33.58
Consensus MFE -20.25
Energy contribution -20.78
Covariance contribution 0.54
Combinations/Pair 1.43
Mean z-score -1.63
Structure conservation index 0.60
SVM decision value 0.05
SVM RNA-class probability 0.557336
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1552266 102 - 27905053
UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUGGUUCCGUCUUCAUUCGGCGACUCCAUCGGCCGGAGA---AGAUGUCCCAUGUUUGGG---
.(((((((((.....))))))))).....((((((....(.(((.((((...((((.......))))...)))).)))))))))---).....((((....))))--- ( -32.70)
>DroSec_CAF1 53743 105 - 1
UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUUCCGUCUUCAUUCGGCGACUCCUUCGGCCGGAGA---AGAUGUCUCAUGUUUGGGCAA
.(((((((((.....))))))))).....((((((....(.(((((.((...((((.......))))...)).)))))))))))---)..((((.((....)))))). ( -33.80)
>DroSim_CAF1 54338 105 - 1
UGUUUGGCAUUAACCGUGCCAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUCCCGUCUUCAUUCGGCGACUCCUCCGGCCGGAGA---AGAUGUCUCAUGUUUGGGCAA
.(((((((((.....))))))))).....((((((....(.((((..(((((((........))).))))....))))))))))---)..((((.((....)))))). ( -35.00)
>DroEre_CAF1 53736 104 - 1
UGUUUAGC-UUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUUCCGUCUUCAGGCGGGAACUCCUUCGGCCGGAGG---AGAGGUCUUGUGUUUUGGUAA
.(((((((-........))))))).....((((((((....(((((.(((((((((....)))))))...)).)))))..))))---))))................. ( -39.40)
>DroAna_CAF1 51046 106 - 1
UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCUUCAAGUGCCAAUAGUCCCGUCUUGGGGCGGAGAUUUGUUCGCAAGGAGU--UUGCCGUCUUCUGUUUGGGCAA
.(((((((((.....))))))))).........((((...(((.((((((((((((....))))).)).))))).))).)))).--(((((............))))) ( -29.40)
>DroPer_CAF1 55263 106 - 1
UGUUUGGCAAGCACAGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUACGUUCGUCUUGGGCCCGGUAUUCGUUUGGCAGGGGAGAUAGACGUCUUUUG--CGGGCAA
.((((((((.......))))))))(((...(((((((...((((((.(((...((.(((....))).)).))))))))))))))))..)))((((....--.)))).. ( -31.20)
>consensus
UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUGGUUCCGUCUUCAGUCGGCGACUCCUUCGGCCGGAGA___AGAUGUCUCAUGUUUGGGCAA
.(((((((((.....)))))))))......(((((......(((((.(((((((........))).))))...))))).))))).......((((.......)))).. (-20.25 = -20.78 +   0.54) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:52 2006