Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,552,266 – 1,552,368 |
Length | 102 |
Max. P | 0.557336 |
Location | 1,552,266 – 1,552,368 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -33.58 |
Consensus MFE | -20.25 |
Energy contribution | -20.78 |
Covariance contribution | 0.54 |
Combinations/Pair | 1.43 |
Mean z-score | -1.63 |
Structure conservation index | 0.60 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1552266 102 - 27905053 UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUGGUUCCGUCUUCAUUCGGCGACUCCAUCGGCCGGAGA---AGAUGUCCCAUGUUUGGG--- .(((((((((.....))))))))).....((((((....(.(((.((((...((((.......))))...)))).)))))))))---).....((((....))))--- ( -32.70) >DroSec_CAF1 53743 105 - 1 UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUUCCGUCUUCAUUCGGCGACUCCUUCGGCCGGAGA---AGAUGUCUCAUGUUUGGGCAA .(((((((((.....))))))))).....((((((....(.(((((.((...((((.......))))...)).)))))))))))---)..((((.((....)))))). ( -33.80) >DroSim_CAF1 54338 105 - 1 UGUUUGGCAUUAACCGUGCCAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUCCCGUCUUCAUUCGGCGACUCCUCCGGCCGGAGA---AGAUGUCUCAUGUUUGGGCAA .(((((((((.....))))))))).....((((((....(.((((..(((((((........))).))))....))))))))))---)..((((.((....)))))). ( -35.00) >DroEre_CAF1 53736 104 - 1 UGUUUAGC-UUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCGAUGGUUCCGUCUUCAGGCGGGAACUCCUUCGGCCGGAGG---AGAGGUCUUGUGUUUUGGUAA .(((((((-........))))))).....((((((((....(((((.(((((((((....)))))))...)).)))))..))))---))))................. ( -39.40) >DroAna_CAF1 51046 106 - 1 UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCUUCAAGUGCCAAUAGUCCCGUCUUGGGGCGGAGAUUUGUUCGCAAGGAGU--UUGCCGUCUUCUGUUUGGGCAA .(((((((((.....))))))))).........((((...(((.((((((((((((....))))).)).))))).))).)))).--(((((............))))) ( -29.40) >DroPer_CAF1 55263 106 - 1 UGUUUGGCAAGCACAGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUACGUUCGUCUUGGGCCCGGUAUUCGUUUGGCAGGGGAGAUAGACGUCUUUUG--CGGGCAA .((((((((.......))))))))(((...(((((((...((((((.(((...((.(((....))).)).))))))))))))))))..)))((((....--.)))).. ( -31.20) >consensus UGUUUGGCAUUAACCGUGCUAAAUGUUAAUUCUCCUCAAGUGCCAAUGGUUCCGUCUUCAGUCGGCGACUCCUUCGGCCGGAGA___AGAUGUCUCAUGUUUGGGCAA .(((((((((.....)))))))))......(((((......(((((.(((((((........))).))))...))))).))))).......((((.......)))).. (-20.25 = -20.78 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:52 2006