Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,375,939 – 11,376,058 |
Length | 119 |
Max. P | 0.589246 |
Location | 11,375,939 – 11,376,058 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.48 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -27.20 |
Energy contribution | -26.68 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.17 |
Structure conservation index | 0.96 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11375939 119 + 27905053 AAUAAGACAAAAAUUUAUUU-AAGUAUUUGUCUUACCUCUAGUUGCACAUCUUUGGCUUUCAUCUGCAGGGUAUGAGCAAUCACUGAUUGAGUCUGAUCAAUCCAUUGGGUAGCCGAGAA ..(((((((((.((((....-)))).))))))))).(((..(((((.((((((((.(........)))))).))).)))))....((((((......))))))....((....))))).. ( -28.20) >DroSec_CAF1 123577 120 + 1 AAUACUAAACAAACUUAAUUAAAUUAUUUGUGUUACCUCUAGUUGCACAUCUUUGGCUUUCAUCUGCAGGGUAUGAGCAAUCACAGAUUGAGUCUGAUCAAUCCAUUGGGUAGCCGAGAA ..........................((((.(((((((...(((((.((((((((.(........)))))).))).)))))....((((((......))))))....))))))))))).. ( -26.60) >DroSim_CAF1 114581 120 + 1 AAUACUAAACAAACUUAAUUAAAUUAUUUGUGUUACCUCUAGUUGCACAUCUUUGGCUUUCAUCUGCAGGGUAUGGGCAAUCACUGAUUGAGUCUGAUCAAUCCAUUGGGUAGCCGAGAA ..........................((((.(((((((...(((((.((((((((.(........)))))).))).)))))....((((((......))))))....))))))))))).. ( -26.40) >DroEre_CAF1 111134 118 + 1 AAUUAGA-GAAAAAUG-AUUAAAUAAUUUGCGCCACCUCUAGUUGCACAUCCUUGGCUUUCAUCUGCAGGGCAUGAGCAAUCACUGAUUGAGUCUGGUCAAUCCAUUGGGUGGCCGAGAA .......-........-.........((((.(((((((...(((((.((((((((.(........)))))).))).)))))....((((((......))))))....))))))))))).. ( -32.70) >DroYak_CAF1 113676 118 + 1 AAUUCAA-ACAAAAUU-AUUAAAUAAUUUGUGUUACCUCUAGUUGCACAUCCUUGGCCUUCAUCUGCAGGGUAUGAGCAAUCACUGAUUGAGUCUGGUCAAUCCACUGGGUAGCCGAGAA .......-........-.........((((.(((((((...(((((.((((((((...........))))).))).)))))....((((((......))))))....))))))))))).. ( -27.10) >consensus AAUACGA_ACAAAAUUAAUUAAAUUAUUUGUGUUACCUCUAGUUGCACAUCUUUGGCUUUCAUCUGCAGGGUAUGAGCAAUCACUGAUUGAGUCUGAUCAAUCCAUUGGGUAGCCGAGAA ..........................((((.(((((((...(((((.((((((((.(........)))))).))).)))))....((((((......))))))....))))))))))).. (-27.20 = -26.68 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:04 2006