Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,372,443 – 11,372,563 |
Length | 120 |
Max. P | 0.649855 |
Location | 11,372,443 – 11,372,563 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -42.26 |
Consensus MFE | -40.76 |
Energy contribution | -40.68 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.06 |
Mean z-score | -1.11 |
Structure conservation index | 0.96 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11372443 120 + 27905053 CUCCAACCGAAUUGACAGCCCAGCUGCGCUUUCCAUCGCGCACCACGCAGAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAAUUUGGUGGCCGUGAGUUGGGCAUGCUCGCGGAUAA ......(((....(.((((((((((((((........)))).((((.(((((.((.(.((((............)))).).)).))))))))).....)))))))).)))...))).... ( -42.10) >DroSec_CAF1 120083 120 + 1 CUCCAACCGAAUUGACUGCCCAGCUGCGCUUUCCAUCGCGCACCACGCAGAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAAUUUAGUGGCCGUGAGUUGGGCAUGCUCGCGGAUAA ......(((....(..((((((((.((((((..(((((((.....))).)))).))))))...........((.((((.(((.......))))))).))))))))))..)...))).... ( -42.30) >DroSim_CAF1 111118 120 + 1 CUCCAACCGAAUUGACUGCCCAGCUGCGCUUUCCAUCGCGCACCACGCAGAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAAUUUGGUGGCCGUGAGUUGGGCAUGCUCGCGGAUAA ......(((....(..(((((((((((((........)))).((((.(((((.((.(.((((............)))).).)).))))))))).....)))))))))..)...))).... ( -42.80) >DroEre_CAF1 107869 120 + 1 CUCCAACCGAAUUGACUGCCCAGCUGCGCUUUCCGUCGCGCACCACGCAAAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAACUUGGUGGCCGUGAGCUGGGCGUGCUCCCGGAUGA ...((.(((....(..(((((((((((((........))))..(((((....)).(((((((............)))).(((.......))))))))))))))))))..)...))).)). ( -42.90) >DroYak_CAF1 110189 120 + 1 CUCCAACCGAAUUGACUGCCCAGCUGCGCUUCCCAUCGCGCACCACGCAGAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAACUUGGUGGCCGUGAGUUGGGCAUGCUCCCGGAUGA ...((.(((....(..(((((((((((((........))))..(((((....)).(((((((............)))).(((.......))))))))))))))))))..)...))).)). ( -41.20) >consensus CUCCAACCGAAUUGACUGCCCAGCUGCGCUUUCCAUCGCGCACCACGCAGAUGCAGGCGCCACAUCCUCCCUCCUGGCACAUGAAUUUGGUGGCCGUGAGUUGGGCAUGCUCGCGGAUAA ......(((....(..(((((((((((((........))))..(((((....)).(((((((............)))).(((.......))))))))))))))))))..)...))).... (-40.76 = -40.68 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:47 2006