Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,371,567 – 11,371,685 |
Length | 118 |
Max. P | 0.903450 |
Location | 11,371,567 – 11,371,685 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -22.24 |
Consensus MFE | -17.58 |
Energy contribution | -17.38 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.22 |
Mean z-score | -1.99 |
Structure conservation index | 0.79 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11371567 118 + 27905053 UUGAUCGAAAUAUUGCCAGCCAAAGUUCCAGACUGUAACGAUACGAAAAUAAAUGUAUAACUCAAACU--AAUCAAAACAAAUCUACUUACGUUUCGCACUGGAACAUUGGCAAUCAAAU ..................(((((.(((((((..((((....)))).....(((((((...........--..................)))))))....))))))).)))))........ ( -21.85) >DroSec_CAF1 119207 118 + 1 UUGAUCGAAACAUUGCCAGCCAAGGUUCCAGACUGUAACAAUACGAAAAUAAAUGUAUAACUCAAACU--AAUCAAAACAAAUCUACUUACGUUUCGCACUGGUACAUUGGCAAUCAAAU ..................(((((.((.((((..((((....)))).....(((((((...........--..................)))))))....)))).)).)))))........ ( -17.45) >DroSim_CAF1 110242 118 + 1 UUGAUCGAAAUAUUGCCAGCCAAAGUUCCAGACUGUAACAAUACGAAAAUAAAUGUAUUACUCAAACU--AAUCUAAAAAAAUGUACUUACGUUUCGCACUGGAACAUUGGCAAUCAAAU ..................(((((.(((((((..(((...((((((........)))))).........--.........((((((....)))))).)))))))))).)))))........ ( -23.90) >DroEre_CAF1 106991 120 + 1 UUAAUCGAAAUAUUGCCAGCCAAAGUUCCAGACUGUAAGGAGGGGAGAGGAAAGUUUCAAAUCAAGUUAUAAUCAAAUCAAAUCUACUUACGUUUCGCACUGGAACAUUGGCAAUCAAGU ..................(((((.(((((((...(((((.(((.((...((..((..(.......)..))..))...))...))).)))))(.....).))))))).)))))........ ( -26.80) >DroYak_CAF1 109309 120 + 1 UUAAUCGAAAUGUUGCCAGCCAAAGUUCCAGACUGUUAAAAUAAGAAAAUAAAGUUAUAAAUUAAGUUACAAUCAAAACAAAUCUACUUACGUUUCGCACUGGAACAUUGGCAAUCAAAU ..................(((((.(((((((..(((.(((.((((.........(((.....)))(((........))).......))))..))).)))))))))).)))))........ ( -21.20) >consensus UUGAUCGAAAUAUUGCCAGCCAAAGUUCCAGACUGUAACAAUACGAAAAUAAAUGUAUAACUCAAACU__AAUCAAAACAAAUCUACUUACGUUUCGCACUGGAACAUUGGCAAUCAAAU ..................(((((.(((((((.........(((((........))))).................................(.....).))))))).)))))........ (-17.58 = -17.38 + -0.20)
Location | 11,371,567 – 11,371,685 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.86 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -21.22 |
Energy contribution | -21.62 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.74 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11371567 118 - 27905053 AUUUGAUUGCCAAUGUUCCAGUGCGAAACGUAAGUAGAUUUGUUUUGAUU--AGUUUGAGUUAUACAUUUAUUUUCGUAUCGUUACAGUCUGGAACUUUGGCUGGCAAUAUUUCGAUCAA ..(((...(((((.(((((((.((((.(((.(((((((..(((..(((((--......))))).)))))))))).))).))))......))))))).)))))...)))............ ( -33.20) >DroSec_CAF1 119207 118 - 1 AUUUGAUUGCCAAUGUACCAGUGCGAAACGUAAGUAGAUUUGUUUUGAUU--AGUUUGAGUUAUACAUUUAUUUUCGUAUUGUUACAGUCUGGAACCUUGGCUGGCAAUGUUUCGAUCAA .....(((((((.((((.((((((((((.((((((..((....((..(..--...)..))..))..)))))))))))))))).))))(((.(....)..))))))))))........... ( -27.90) >DroSim_CAF1 110242 118 - 1 AUUUGAUUGCCAAUGUUCCAGUGCGAAACGUAAGUACAUUUUUUUAGAUU--AGUUUGAGUAAUACAUUUAUUUUCGUAUUGUUACAGUCUGGAACUUUGGCUGGCAAUAUUUCGAUCAA ..(((...(((((.((((((((((((((.((((((..(((..((((((..--..)))))).)))..)))))))))))))..........))))))).)))))...)))............ ( -28.10) >DroEre_CAF1 106991 120 - 1 ACUUGAUUGCCAAUGUUCCAGUGCGAAACGUAAGUAGAUUUGAUUUGAUUAUAACUUGAUUUGAAACUUUCCUCUCCCCUCCUUACAGUCUGGAACUUUGGCUGGCAAUAUUUCGAUUAA ..(((...(((((.(((((((.((.....(((((.((.........(((((.....))))).((........))....)).))))).))))))))).)))))...)))............ ( -24.70) >DroYak_CAF1 109309 120 - 1 AUUUGAUUGCCAAUGUUCCAGUGCGAAACGUAAGUAGAUUUGUUUUGAUUGUAACUUAAUUUAUAACUUUAUUUUCUUAUUUUAACAGUCUGGAACUUUGGCUGGCAACAUUUCGAUUAA ..(((((((((((.(((((((.((.(((.(((((.((((..(((..(((((.....)))))...)))...)))).))))))))....))))))))).)))))((....))....)))))) ( -29.20) >consensus AUUUGAUUGCCAAUGUUCCAGUGCGAAACGUAAGUAGAUUUGUUUUGAUU__AGUUUGAGUUAUACAUUUAUUUUCGUAUUGUUACAGUCUGGAACUUUGGCUGGCAAUAUUUCGAUCAA ..(((...(((((.(((((((.((...((....)).((((......)))).....................................))))))))).)))))...)))............ (-21.22 = -21.62 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:46 2006