Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,370,252 – 11,370,372 |
Length | 120 |
Max. P | 0.656185 |
Location | 11,370,252 – 11,370,372 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -29.80 |
Energy contribution | -30.60 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11370252 120 - 27905053 UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCAAACCCAGUCUGUAAUUGCCCAUAU ......(((......))).((((.((..(((((...((.((((((((.......)))))))).)).(((((..((.((......)).)).))))).......))))).....)))))).. ( -32.40) >DroSec_CAF1 117887 120 - 1 UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACAGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU ......(((......))).((((.((.(((..((..(((((((..(((......))).((((....)))).....)))))))...))..)))((((((.......)))))).)))))).. ( -35.90) >DroSim_CAF1 108922 120 - 1 UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACAGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU ......(((......))).((((.((.(((..((..(((((((..(((......))).((((....)))).....)))))))...))..)))((((((.......)))))).)))))).. ( -35.90) >DroEre_CAF1 105676 120 - 1 UCUGCAGUAUCACUUCACCAUGGAGCCCCAGACAACUGUGGCCAUUCCGUUUGAAGAUGGUCUCAAAAUCUUUUCGGCCACCCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU ...(((((....((((.....))))...(((((...(((((((((.(((...((((((.........)))))).)))((((...)))))))).)))))....)))))..)))))...... ( -31.30) >DroYak_CAF1 107997 120 - 1 UCUGCAGUAUCACUUCACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACCCAGUGGAUGGAUCACACCCAGGCUGUGAUUGCCCAUAU ...................((((.((.(((..((...((((((..(((......))).((((....)))).....))))))....))..)))(((((((....).)))))).)))))).. ( -35.30) >consensus UCUGCAGUAUCACUUUACCAUGGAGCCCCAGACAACUGUGGCCAUUCCCUUUGAGGAUGGUCUCAAGAUCUUUUCGGCCACUCAGUGGAUGGAUCACACCCAGUCUGUGAUUGCCCAUAU ...................((((.((.(((..((...((((((..(((......))).((((....)))).....))))))....))..)))((((((.......)))))).)))))).. (-29.80 = -30.60 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006