Locus 4226

Sequence ID 3R_DroMel_CAF1
Location 11,367,240 – 11,367,360
Length 120
Max. P 0.530603
window6836

overview

Window 6

Location 11,367,240 – 11,367,360
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.42
Mean single sequence MFE -49.24
Consensus MFE -42.42
Energy contribution -42.14
Covariance contribution -0.28
Combinations/Pair 1.14
Mean z-score -1.21
Structure conservation index 0.86
SVM decision value -0.01
SVM RNA-class probability 0.530603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11367240 120 - 27905053
CAGUGGUACUGGCCAAAGACUCUAACGGAGCUCUUCGGAGCCCUUAGUCAGGUGGCGAACGGAGAACUCUACAUGCUGGUGGCCGGGAACACCGCCCAUGGAGUUUACCGGCGACCCAGG
........(((((((......((((.((.((((....)))))))))).....))))...(((.((((((((...((.((((........))))))...)))))))).)))......))). ( -46.10)
>DroSec_CAF1 114878 120 - 1
CAGUGGUACUGGCCCAAGUCCCUGGCAGAGCUCUUCGGAGCCCUUAGUCAGGUGGCGAACGGAGAUCUCUACAUGCUGGUGGCCGGAAACACCGCCCAUGGAGUUUACCGGCGACCCAGG
..((((......((...(((((((((((.((((....)))).))..)))))).)))....))......))))...(((((.(((((((((.(((....))).)))).))))).).)))). ( -50.80)
>DroSim_CAF1 105910 119 - 1
CAGUGGUACUGGCCCAAGUCCCUGGCAGAG-UCUUUGGAGCCCUUAGUCAGGUGGCGAACGGAGAUCUCUACAUGCUGGUGGCCGGAAACACCGCCCAUGGAGUUUACCGGCGACCUAGG
(((.((.(((......))))))))(.((((-((((((..((((((....))).)))...)))))).)))).)...(((((.(((((((((.(((....))).)))).))))).))).)). ( -46.20)
>DroEre_CAF1 102681 120 - 1
CACUGGUACUGGCCAAAGUCCCUGACGGAGCUCUUCGGGUCCCUCGGUCAGGUGGCAAGCGGAGAACUCUACAUGCUGGUGGCCGGGAACACCGCCCAUGGAGUUUACCGGCGACCCAGG
..((((...(.(((...(((((((((.(((.((....))...))).)))))).)))....((.((((((((...((.((((........))))))...)))))))).))))).).)))). ( -51.60)
>DroYak_CAF1 104980 120 - 1
CACUGGUACUGGCCAAAGUCGCUGACGGAGCUCUUCGGGGCCCUCAGUCAGGUGGCGAACGGAGAACUCUACAUGCUGGUGGCCGGGAACACCGCCCAUGGAGUUUACCGGCGACCCAGG
..((((...(.(((...(((((((((((.((((....))))))...)))).)))))....((.((((((((...((.((((........))))))...)))))))).))))).).)))). ( -51.50)
>consensus
CAGUGGUACUGGCCAAAGUCCCUGACGGAGCUCUUCGGAGCCCUUAGUCAGGUGGCGAACGGAGAACUCUACAUGCUGGUGGCCGGGAACACCGCCCAUGGAGUUUACCGGCGACCCAGG
....(((....)))......((((..((((.((((((..(((((......)).)))...)))))).)))).......(((.(((((((((.(((....))).)))).))))).))))))) (-42.42 = -42.14 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:29 2006