Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,363,743 – 11,363,903 |
Length | 160 |
Max. P | 0.963930 |
Location | 11,363,743 – 11,363,863 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -48.86 |
Consensus MFE | -42.84 |
Energy contribution | -42.80 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.88 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11363743 120 + 27905053 CCUUGGAUCGCAUAAAGCCCACGGGGUUGGGACUCUUCUGGAGCAACUCGAUGCGAAAGUCUAUCGGGAUAUCCUUGGCGCCUGGUGGGUGGUAGUUCCAGGUGCGGUUUGUCAGAAUCU ....(((((((((...((((((.((((.(((((((.....)))...((((((((....))..))))))...))))....)))).))))))((.....))..))))))))).......... ( -44.60) >DroSec_CAF1 111381 120 + 1 CCUUGGAUCGCAUGAAGCCCACCGGGUUGGGACUCUUCUGGAGCAACUCGAUGCGAAAGUCUAUCGGGAUAUCCUUGGCCCCUGGUGGGUGGUAGUUCCAGGUGCGGUUCGUCAGGAUCU (((((((((((((...(((((((((((..((.(((.....)))...((((((((....))..)))))).....))..))))..)))))))((.....))..))))))))))..))).... ( -52.30) >DroSim_CAF1 102415 120 + 1 CCUUGGAUCGCAUGAAGCCCACCGGGUUGGGACUUUUCUGGAGCAACUCGAUGCGGAAAUCUAUUGGGAUAUCCUUGGCGCCUGGUGGGUGGUAGUUCCAGGUGCGGUUCGUCAGUAUCU ....(((((((((...(((((((((((.((((...(((..(.(((......)))((....)).)..)))..))))....)))))))))))((.....))..))))))))).......... ( -44.60) >DroEre_CAF1 98730 120 + 1 CCUUGGACCGCAUGAAGCCCACCGGGUUGGGACUCUUCUGGAGCAGCUCGAUGCGAAAGUCUAUCGGGAUGUCCUUGGCUCCCGGCGGGUGGUAGUUCCAGGUGCGGUUCGUCAGGAUCU (((((((((((((((..((((......))))..))..(((((((.(((((..((....))...((((((.((.....)))))))))))))....)))))))))))))))))..))).... ( -52.90) >DroYak_CAF1 101461 120 + 1 CCUUGGACCGCAUGAAGCCGACGGGGUUGGGACUCUUCUGGAGCAACUCGAUGCGAAAGUCUAUCGGGAUGUCUUUGGCUCCUGGUGGGUGGUAGUUCCAGGUGCGGUUCGUCAGGAUCU (((((((((((((....(((((...))))).......(((((((.(((....((....))(((((((((.((.....)))))))))))..))).)))))))))))))))))..))).... ( -49.90) >consensus CCUUGGAUCGCAUGAAGCCCACCGGGUUGGGACUCUUCUGGAGCAACUCGAUGCGAAAGUCUAUCGGGAUAUCCUUGGCGCCUGGUGGGUGGUAGUUCCAGGUGCGGUUCGUCAGGAUCU ....(((((((((...((((((((((..(((((((.....)))...((((((((....))..))))))...)))).....))))))))))((.....))..))))))))).......... (-42.84 = -42.80 + -0.04)
Location | 11,363,783 – 11,363,903 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -30.78 |
Energy contribution | -30.94 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.16 |
Structure conservation index | 0.89 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11363783 120 - 27905053 UAUCUCACCGAGCAGCUGGUUUACGAUCGUCAGACAGGUCAGAUUCUGACAAACCGCACCUGGAACUACCACCCACCAGGCGCCAAGGAUAUCCCGAUAGACUUUCGCAUCGAGUUGCUC .........((((((((.(....(((..(((......(((((...))))).....((.(((((............))))).))...((.....))....)))..)))...).)))))))) ( -35.80) >DroSec_CAF1 111421 120 - 1 UAUCUCACCGAGCAGCUGGUUUACGAUCGCCAGACAGGACAGAUCCUGACGAACCGCACCUGGAACUACCACCCACCAGGGGCCAAGGAUAUCCCGAUAGACUUUCGCAUCGAGUUGCUC .........((((((((.(....(((..(((...(((((....)))))..........(((((............)))))))).(((..(((....)))..))))))...).)))))))) ( -34.90) >DroSim_CAF1 102455 120 - 1 UAUCUCACCGAGCAGCUGGUUUACGAUCGCCAGACAGGUCAGAUACUGACGAACCGCACCUGGAACUACCACCCACCAGGCGCCAAGGAUAUCCCAAUAGAUUUCCGCAUCGAGUUGCUC .........(((((((((((((.(..((....))..)(((((...))))))))))((.(((((............))))).))...(((.(((......))).)))......)))))))) ( -36.50) >DroEre_CAF1 98770 120 - 1 UAUCUCACCGAGCAGCUGGUUUACGAUCGCCAGACAGGUCAGAUCCUGACGAACCGCACCUGGAACUACCACCCGCCGGGAGCCAAGGACAUCCCGAUAGACUUUCGCAUCGAGCUGCUC .........(((((((((((((.(..((....))..)(((((...))))))))))((...(((.....))).....(((((.(....)...)))))..........))....)))))))) ( -36.70) >DroYak_CAF1 101501 120 - 1 UAUCUCACCGAGCAUCUGGUUUACGAUCGCCAGACUGGUCAGAUCCUGACGAACCGCACCUGGAACUACCACCCACCAGGAGCCAAAGACAUCCCGAUAGACUUUCGCAUCGAGUUGCUC .........(((((.(((((((.((.((....)).))(((((...))))))))))((.(((((............))))).))...........((((.(.....)..)))))).))))) ( -29.30) >consensus UAUCUCACCGAGCAGCUGGUUUACGAUCGCCAGACAGGUCAGAUCCUGACGAACCGCACCUGGAACUACCACCCACCAGGAGCCAAGGAUAUCCCGAUAGACUUUCGCAUCGAGUUGCUC .........(((((((((((((.(..((....))..)(((((...))))))))))((.(((((............))))).))...........((((.(.....)..)))))))))))) (-30.78 = -30.94 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:14 2006