Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,549,026 – 1,549,118 |
Length | 92 |
Max. P | 0.581983 |
Location | 1,549,026 – 1,549,118 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -16.49 |
Consensus MFE | -10.70 |
Energy contribution | -11.37 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1549026 92 + 27905053 AUCCCACAAUCCUUUCAAACGCACA-------GCACAAGG-------CACACACACAAUGCGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUACACAAAUG ....................((...-------((.....)-------).........((((..(((((((((.....))))).))))..))))))........... ( -17.40) >DroVir_CAF1 60933 76 + 1 ----CGCAAUCCUUUCAGCUACGCA----------------------CACACACACAA----GCGUGUCCUUACAAAAAGGAUUACGCCGCAUGCUUAGACAAAUA ----.(((.........((...)).----------------------...........----((((((((((.....))))).)))))....)))........... ( -13.80) >DroEre_CAF1 49961 102 + 1 ----CACAAUCCUUUCAUACACACAGCACACAGCACAAGGCACAAGGCACACACACAAUGCGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUAGACAAAUG ----....................(((.....((.....))................((((..(((((((((.....))))).))))..))))))).......... ( -17.90) >DroYak_CAF1 46345 92 + 1 ----CACAAUCCUUUCAUUCACACA-------GCACAAGGCACA---CACACACACAAUGCGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUAGACAAAUG ----....................(-------((....(.....---).........((((..(((((((((.....))))).))))..))))))).......... ( -15.50) >DroAna_CAF1 48547 88 + 1 ----AGCAAUCCUUUCAGACACACA-------CCACACGG-------CUCGCAUACAAUGCGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUAGAUAAAUG ----.((((((((((..(((((...-------((....))-------.((((((...)))))).))))).......))))))))..)).................. ( -19.70) >DroPer_CAF1 51973 86 + 1 ----AGCAAUCCUUUCAGACACACA-------CCGCACGG-------CG--CACACAAUGAGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUAGACAAAUG ----((((....(((((......(.-------((....))-------.)--.......)))))(((((((((.....))))).)))).....)))).......... ( -14.62) >consensus ____CACAAUCCUUUCAGACACACA_______GCACAAGG_______CACACACACAAUGCGACGUGUCCUUACAAAAAGGAUUACGCAGCAUGCUUAGACAAAUG .........................................................((((..(((((((((.....))))).))))..))))............. (-10.70 = -11.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:50 2006