| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,361,601 – 11,361,791 |
| Length | 190 |
| Max. P | 0.971912 |
| Location | 11,361,601 – 11,361,691 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 92.59 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -30.46 |
| Energy contribution | -30.28 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11361601 90 + 27905053 CAGCAUGUAGGGCAGCUUCUCUUUGACUGCUCCCUGCAGAGCGGCAAAGAGGUCACCCAGACUCACUGGCCAACUCCAGCGGCUGCCAUC ..........((((((..(((((((.((((((......)))))))))))))(((.....))).(.((((......)))).)))))))... ( -36.80) >DroSec_CAF1 109141 90 + 1 CAGCAUGUAGGGCAGUUUCUCUUUGAGUGCUCCCUGCAGAGCGGCAAAGAGGUCACCCAGACUCUCCGGCCAACUCCAACGGCUGCCAUC ..((.(((((((.(((..(((...))).))))))))))..))(((...((((((.....))).))).((((.........)))))))... ( -33.50) >DroEre_CAF1 96508 90 + 1 CAGCAUGUAGGGCAGCUUCUCCUUGACUGCUCCCUGCAGAGCGGCAAAGAGCUCCGCCAGACUCUGUGGCCAACUCCAGCGGCUGCCAUC ((((.(((((((.(((.((.....))..))))))))))(((.(((..((((((.....)).))))...)))..))).....))))..... ( -32.70) >DroYak_CAF1 99230 90 + 1 CAGCAUGUAGGGCAGCUUCUCCUUGACUGCUCCCUGCAGGGCGGCAAAGAGUUCCCCCAGACUCUCUGGCCAGCUCCAGCGGCUGCCAUC .....(((((((.(((.((.....))..)))))))))).((((((...(((((...((((.....))))..))))).....))))))... ( -37.40) >consensus CAGCAUGUAGGGCAGCUUCUCCUUGACUGCUCCCUGCAGAGCGGCAAAGAGGUCACCCAGACUCUCUGGCCAACUCCAGCGGCUGCCAUC ..((.(((((((.(((.((.....))..))))))))))..))(((...(((.((.....)))))...((((.........)))))))... (-30.46 = -30.28 + -0.19)
| Location | 11,361,691 – 11,361,791 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 96.50 |
| Mean single sequence MFE | -42.30 |
| Consensus MFE | -41.97 |
| Energy contribution | -41.60 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11361691 100 + 27905053 CGGAUACAGUUGGCUGCCCUUGGGCUGCUGCUUCUUGCAGCUGCCGGAGCAGGUUUGGCCGGUCUUGGGACACUUUUUGGUGCUCAGGUCUUCAAUGUCA ..((((.....((((((((((.(((.(((((.....))))).))).)))..)))..))))((.((((((.((((....)))))))))).))....)))). ( -42.30) >DroSec_CAF1 109231 100 + 1 CGGAUACAGUUGGCUGCUCUUGGGCUGCUGCUUCUUGCAGCUGCCGGAGCAGGCUUGGCCAGUCUUGGGACACUGUUUGGUGCUCAGGUCUUCAAUGUCA ..((((.....(.(((((((..(((.(((((.....))))).)))))))))).)((((..((.((((((.((((....)))))))))).)))))))))). ( -43.30) >DroEre_CAF1 96598 100 + 1 CGGAUACAGUUGGCUGCCCUUGGGCUGCUGCUUCUUGCAGCUGCCGGAGCAGGCUUGGCCCGUCUUGGGACACUGUUUGGUGCUCAGGUCCUCAAUGUCA ..((((.....((((((((((.(((.(((((.....))))).))).)))..)))..)))).(.((((((.((((....)))))))))).).....)))). ( -41.80) >DroYak_CAF1 99320 100 + 1 CGGAUACAGUUGGCUGCCCUUGGGCUGCUGCUUCUUGCAGCUGCCGGAGCAGGCUUGGCCCGUCUUGGGACACUGUUUGGUGCUCAGGUCCUCAAUGUCG ..((((.....((((((((((.(((.(((((.....))))).))).)))..)))..)))).(.((((((.((((....)))))))))).).....)))). ( -41.80) >consensus CGGAUACAGUUGGCUGCCCUUGGGCUGCUGCUUCUUGCAGCUGCCGGAGCAGGCUUGGCCCGUCUUGGGACACUGUUUGGUGCUCAGGUCCUCAAUGUCA ..((((.....((((((((((.(((.(((((.....))))).))).)))..)))..)))).(.((((((.((((....)))))))))).).....)))). (-41.97 = -41.60 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:12 2006