Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,361,121 – 11,361,241 |
Length | 120 |
Max. P | 0.500000 |
Location | 11,361,121 – 11,361,241 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -49.24 |
Consensus MFE | -47.36 |
Energy contribution | -47.44 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.05 |
Mean z-score | -1.07 |
Structure conservation index | 0.96 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11361121 120 + 27905053 UUGUCCACCGCCUCCUGGACAAUCACUUGAGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGAUUGCCCGCCAAGGUGCCAGCC (((((((........)))))))....(((.((((((((..((((..(((.(.......).)))..))))..))...((((((((...(((.....)))..)))))))).))))))))).. ( -42.90) >DroSec_CAF1 108661 120 + 1 UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGAACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGGUGGCCAGGUUGCCCGCCAAGGUGCCGGCC (((((((........))))))).......(((((((.(((..(((.....((((....)))).....)))..))).((((((((.((((((...)))))))))))))).))))))).... ( -51.60) >DroSim_CAF1 99451 120 + 1 UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGGUUGCCCGCCAAGGUGCCGGCC (((((((........))))))).......(((((((((..((((..(((.(.......).)))..))))..))...((((((((.(((((.....))))))))))))).))))))).... ( -50.00) >DroEre_CAF1 96029 120 + 1 UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGCCAGGUUGCCCGCCAAGGUGCCGGCC (((((((........))))))).......(((((((((..((((..(((.(.......).)))..))))..))...((((((((.(((((.....))))))))))))).))))))).... ( -50.40) >DroYak_CAF1 98751 120 + 1 UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGUGUGCUUGAUGGUCAGGUUGCCCGCCAAGGUGCCGGCC (((((((........))))))).......(((((((.((((..((..(((.((.((((((((((.(((....)))...)))))))).)).)).))).))..))))....))))))).... ( -51.30) >consensus UUGUCCACCGCCUCCUGGACAAUCACUUGGGCAUCUAGGGCCUCCAGGACGAUGAACACAUCCGAGGGGAACUCCGGGUGGGCAUGCUUGAUGGACAGGUUGCCCGCCAAGGUGCCGGCC (((((((........))))))).......(((((((.(((..(((.....((((....)))).....)))..))).((((((((.(((((.....))))))))))))).))))))).... (-47.36 = -47.44 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:10 2006