Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,359,404 – 11,359,524 |
Length | 120 |
Max. P | 0.995800 |
Location | 11,359,404 – 11,359,524 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -40.03 |
Consensus MFE | -35.04 |
Energy contribution | -34.36 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.18 |
Mean z-score | -2.14 |
Structure conservation index | 0.88 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11359404 120 + 27905053 GGUAUGACCAAUGGGUGAUUCGUUGGCCAGAUAUCCAGCAUCCUCGUAGAAUCGACUAACGAUACCGGAGAUCUUUCCGGAUUUCUGAACGAAAAAGUCGUAGUCGCAAUGGAAGGCCCA ((.....))..(((((..(((((((((..(....)..)).............((((((.((((.((((((....)))))).((((.....))))..)))))))))))))))))..))))) ( -36.50) >DroSec_CAF1 106952 120 + 1 GGUGUGACCUAUGGGUGAUUCGUUGGACAGAUAUCCAGCAUCCUCGUAGAAUCGACUUACGAUACCGGAAAUCUUUCCGGAUUUCUGAACGAAGAAGUCGUAAUCGCAAUGGAAGGCCCA (((.(..((((((((.(((..((((((......))))))))))))))))...(((.(((((((.((((((....))))))..((((......))))))))))))))....)..).))).. ( -40.20) >DroSim_CAF1 97734 120 + 1 GGUGUGACCAAUGGGUGAUUCGUUGGACAGAUAUCCAGCAUCCUCGUAGAAUCGACUUACGAUACCAGAAAUCUUUCCGGAUUUCUGAACGAAGAAGUCGUAGUCGCAAUGGAAGGCCCA ((.....))..(((((.....((((((......)))))).(((.....((..((((((.......(((((((((....))))))))).......))))))...)).....)))..))))) ( -38.74) >DroEre_CAF1 94382 120 + 1 GGCAUGGCCUAUGGGCGAUUCGUUGGAUAGAUAUCCAGCAUCCUCGUAGAACCGACUUACGAUGCCGGAGAUUUUACCGGACUUCUGAACGAAGAAAUCGUAGUCGCAAUGGAAUGCCCA ((((((..(((((((.(((..(((((((....)))))))))))))))))..)(((((.(((((.((((........)))).((((.....))))..)))))))))).......))))).. ( -44.50) >DroYak_CAF1 97057 120 + 1 GGUAUGGCCUAUGGGCGAUUCGUUGGUUAGAUAUCCAGCAUCCUCGUAGAAUCGACUUGUGAUUCCGGAGAUUUUUCCGGAUUUCUGAACGAAGAAGUCGUAGUCGCAAUGGAAUGCCCA (((((...(((((((.(((..(((((........)))))))))))))))..((.(.((((((((.(((((....)))))(((((((......)))))))..))))))))).))))))).. ( -40.20) >consensus GGUAUGACCUAUGGGUGAUUCGUUGGACAGAUAUCCAGCAUCCUCGUAGAAUCGACUUACGAUACCGGAGAUCUUUCCGGAUUUCUGAACGAAGAAGUCGUAGUCGCAAUGGAAGGCCCA (((...)))..(((((.....(((((........))))).(((.....((..((((((.......(((((((((....))))))))).......))))))...)).....)))..))))) (-35.04 = -34.36 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:59 2006