Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,358,964 – 11,359,204 |
Length | 240 |
Max. P | 0.948160 |
Location | 11,358,964 – 11,359,084 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -43.08 |
Consensus MFE | -39.44 |
Energy contribution | -40.04 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.10 |
Mean z-score | -1.49 |
Structure conservation index | 0.92 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11358964 120 - 27905053 UUUGUGUAUCAUGGAGUACCAGAUCGGUUACUUCGGACAAUACCCCGCUACGGUGGCUAUCUACCACAGCGAUGGCACCGUGGUGGUUUCCCAUGGAGGCAUUGAAAUGGGUCAAGGUGA ....(((....(((((((((.....)).))))))).))).(((((((((((((((.(((((.........))))))))))))))))...(((((............)))))....)))). ( -43.00) >DroSec_CAF1 106512 120 - 1 UCUGUGUAUCAUGGAGUACCAGAUCGGUUACUUUGGGCAAUUCCCCGCUACGGUGGCUAUCUACCACAGCGAUGGCACCGUGGUGGUCUCCCAUGGAGGCAUUGAAAUGGGUCAAGGUGA ((((.((((......))))))))....(((((((((.(..(((..((((((((((.(((((.........)))))))))))))))((((((...))))))...)))...).))))))))) ( -45.70) >DroSim_CAF1 97294 120 - 1 UCUGUGUAUCAUGGAGUACCAGAUCGGUUACUUCGGACAAUACCCCGCUACGGUGGCUAUCUACCACAGCGAUGGCACCGUGGUGGUCUCCCAUGGAGGCAUUGAAAUGGGUCAAGGUGA ....(((....(((((((((.....)).))))))).)))..((((((((((((((.(((((.........)))))))))))))))((((((...))))))........))))........ ( -44.30) >DroEre_CAF1 93942 120 - 1 UCUGUGUAUCAUGGAGUACCAGAUCGGUUACUUUGGACAGUACCCCGCUACAGUGGCUAUCUACCAUAGCGAUGGCACCGUGGUGGUGUCCCAUGGAGGCAUUGAGAUGGGUCAAGGUGA ((((.((((......))))))))....((((((((.((((....((((....))))....)).((((..(((((.(.((((((.......)))))).).)))))..)))))))))))))) ( -40.80) >DroYak_CAF1 96617 120 - 1 UCUGUGCAUCAUGGAGUACCAGAUCGGUUACUUUGGACAGUACCCCGCCACGGUGGCUAUCUACCAUAGCGAUGGCACCGUCGUGGUCUCCCAUGGAGGCAUUGAAAUGGGCCAAGGUAA (((((((........))).))))....(((((((((......((((((.((((((.(((((.........))))))))))).)))((((((...))))))........)))))))))))) ( -41.60) >consensus UCUGUGUAUCAUGGAGUACCAGAUCGGUUACUUUGGACAAUACCCCGCUACGGUGGCUAUCUACCACAGCGAUGGCACCGUGGUGGUCUCCCAUGGAGGCAUUGAAAUGGGUCAAGGUGA ((((.((((......))))))))....(((((((((......(((((((((((((.(((((.........)))))))))))))))((((((...))))))........)))))))))))) (-39.44 = -40.04 + 0.60)
Location | 11,359,084 – 11,359,204 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -44.05 |
Consensus MFE | -37.92 |
Energy contribution | -37.96 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.86 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11359084 120 - 27905053 ACCCGCCCAUAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAAAGUACCAAGUACAGGGAACGGAAGGCGGAGGCUAUAGCCCACAACAAGGAGAACCGCUGGCACAAGCGCGGAUUGGG .(((((((((...)))))).....(((.(((((.((((((..............))))))...(..(((((.(((....)))..(.....).....)))))..).....))))))))))) ( -40.94) >DroSec_CAF1 106632 120 - 1 ACCCGCCCAUAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAAAGUACCAAGUACAGGGAACGCAAGGCGGACGCUAUAGCCCACAACAAGGAGAAUCGCUGGCACAAGCGCGGCUUGGG .(((((((((...))))))........((((((((((((.....((((...)))).(((..(....)((....)).....))).......)).)))))(((......))))))))..))) ( -43.60) >DroSim_CAF1 97414 120 - 1 ACCCGCCCAUAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAAAGUACCAAGUACAGGGAACGCAAGGCGGACGCUAUAGCCCACAACAAGGAGAACCGCUGGCACAAGCGCGGAUUGGG .(((((((((...))))))....((.(((((((.((((((..............)))))).)))..(((((..((....))((.......))....)))))))))))..........))) ( -42.34) >DroEre_CAF1 94062 120 - 1 GCCCGCCCACAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAGAGCACCAAGUACAGGGAACGCAGGGCGGAGGUCGCUGCCCACAACAAGGAGAACCGCUGGCACAAGCGCGGCUUGGG .((((((((.....)))))........((((((.((((((..............))))))..((.((((((......))))))....((.((....))..)))).....))))))..))) ( -46.84) >DroYak_CAF1 96737 120 - 1 GCCCGCCCAUAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAGAGCACCAAGUACAGGGCACGCAGGGCGGAGAUCGCUGCCCACAACAAGGAGAACCGCUGGCGCAAGCGCGGAUUGGG .(((((((((...)))))).........(((((..(((((..............)))))..))).((((((......)))))).......))....((((..((....))))))...))) ( -46.54) >consensus ACCCGCCCAUAAAAUGGGCGACAUGAUGCCGCGAUUCCUGGAAAGUACCAAGUACAGGGAACGCAAGGCGGAGGCUAUAGCCCACAACAAGGAGAACCGCUGGCACAAGCGCGGAUUGGG .((((((((.....)))))....((.(((((((.((((((..............)))))).)))..(((((..((....))((.......))....)))))))))))..........))) (-37.92 = -37.96 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:58 2006