Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,358,567 – 11,358,687 |
Length | 120 |
Max. P | 0.831315 |
Location | 11,358,567 – 11,358,687 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -44.32 |
Consensus MFE | -40.46 |
Energy contribution | -40.42 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.33 |
Structure conservation index | 0.91 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11358567 120 - 27905053 CCUCAUCCAGGAGGCCUACAACCGCAAGAUCAAUCUGAUCGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCCGUAUGCGGUCUCUGCCUCACCGAGGUGGAGUUGGAUGU ...((((((((((((((.....(....)......(((((((....)))))))........))))...(((....))).)))).........(((..((((...))))..))).)))))). ( -44.20) >DroSec_CAF1 106115 120 - 1 CCUCAUCCGGGAGGCCUACAACCGCAAGAUCAAUCUGAUCGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCUGUAUGCGGUCUCUGCCUCACCGAGGUAGAGUUGGAUGU ...(((((((..........((((((........(((((((....))))))).....((((((....(((....))).)))))).))))))(((((((((...)))))))))))))))). ( -46.50) >DroSim_CAF1 96897 120 - 1 CCUCAUCCAGGAGGCCUACAACCGCAAGAUCAAUCUGAUCGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCCGUAUGCGGUCUCUGCCUCACCGAGGUGGAGUUGGAUGU ...((((((((((((((.....(....)......(((((((....)))))))........))))...(((....))).)))).........(((..((((...))))..))).)))))). ( -44.20) >DroEre_CAF1 93542 120 - 1 UCUCAUCAAGGAGGCCUUCAACCGCAAGAUCAAUCUGAUCGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCCGUGUGCGGUCUCUGCCUAACCGAGGUGGAGCUGGAUGU ...((((..((((((((((...(....)......(((((((....))))))).....).)))))...(((....))).)))).....(((.(((..(((.....)))..)))))))))). ( -42.80) >DroYak_CAF1 96220 120 - 1 UCUCAUCAAGGAGGCCUACAACCGCAAGAUCAAUCUGAUUGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCCGUGUGCGGCCUCUGCCUCACCGAGGUGGAGUUGGAUGU ...((((..(((((((.....((((..(......(((((((....)))))))..)..)).))((.(((((((.......))))))))))))))))((..(((....)))..))..)))). ( -43.90) >consensus CCUCAUCCAGGAGGCCUACAACCGCAAGAUCAAUCUGAUCGCCAGCGAUCAGUGCAAGCAGGGCGACAUGGAUCCGUACUCCGUAUGCGGUCUCUGCCUCACCGAGGUGGAGUUGGAUGU ...((((((((((((((.....(....)......(((((((....)))))))........))))...(((....))).)))).........(((((((((...))))))))).)))))). (-40.46 = -40.42 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:55 2006