Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,355,853 – 11,356,029 |
Length | 176 |
Max. P | 0.995205 |
Location | 11,355,853 – 11,355,949 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.46 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -26.90 |
Energy contribution | -27.90 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.89 |
Structure conservation index | 0.70 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11355853 96 + 27905053 GCGACGAAUGUCAUUUGUAUCUG------------------UAUCUGUCCCUGGCCUUGUAUCUGCAUCUCACAGAUGCGGACGCU------GAUGCGGAUGCGCGUGUGCCUCGCUAAU ((((.(.....(((.((((((((------------------((((.((.....))...(..((((((((.....))))))))..).------)))))))))))).)))..).)))).... ( -36.60) >DroSec_CAF1 103435 96 + 1 GCUACGAAUGUCAUUUGUAUCUG------------------CAUCUGCCCCUGGCCUUGUAUCUGCAUCUCGCAGAUGCGAACGCU------GAUGCGGAUGCGCGUGUGCCUCGCUAAU ....(((....(((.((((((((------------------((((.(((...))).((((((((((.....)))))))))).....------)))))))))))).)))....)))..... ( -38.10) >DroSim_CAF1 94191 92 + 1 ----CGAAUGUCAUUUGUAUCUG------------------UAUCUGUCCCUGGCCUUGUAUCUGCAUCUCGCAGAUGCGAACGCU------GAUGCGGAUGCGCGUGUGCCUCGCUAAU ----(((....(((.((((((((------------------((((.......(((.((((((((((.....))))))))))..)))------)))))))))))).)))....)))..... ( -34.21) >DroEre_CAF1 90860 114 + 1 GCGACGAAUGCCAUUUGUAUCUG------UAUCUGGUUCUGAAUCUGUCCCUGGCCUUGUAUCUGCAUUUCGCAGAUGCGGACGCGGAUGCGGAUGCGGAUGCGCGUGUGUCUCGCUAAU ((((((.((((((((((((((((------((((((((((.......((.....))...((((((((.....)))))))))))).)))))))))))))))))).)))).))))..)).... ( -52.20) >DroYak_CAF1 93468 108 + 1 ACGACGAAUGUCAUUUGUAUCUGUAAAUGUAUCUGUAUCUGUAUCUGUCCCUGGCCUUGUAUCUGCAUUUCGCAGAUGC------------GGAUGCGAAUGCGCGUGUGCCUCGCUAAU ..(((....)))................((((.(((((((((((((((.....((.........)).....))))))))------------))))))).))))(((.......))).... ( -30.90) >consensus GCGACGAAUGUCAUUUGUAUCUG__________________UAUCUGUCCCUGGCCUUGUAUCUGCAUCUCGCAGAUGCGAACGCU______GAUGCGGAUGCGCGUGUGCCUCGCUAAU ((((.(.((((((((((((((.........................((.....)).((((((((((.....))))))))))...........)))))))))).))))...).)))).... (-26.90 = -27.90 + 1.00)
Location | 11,355,915 – 11,356,029 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -28.12 |
Energy contribution | -29.20 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.03 |
Mean z-score | -1.62 |
Structure conservation index | 0.88 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11355915 114 - 27905053 AAAGCAGCCUCGAUAAUCACAGGACACAUUUGCAUAUAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGGCACACGCGCAUCCGCAUC------AGCGUC ...((.((((((.(((((....))..(((((((((........((....((((....))))...)))))))))))......))).))))))....(((....)))...------.))... ( -30.90) >DroSec_CAF1 103497 114 - 1 AGCGCGGCCUCGAUAAUCACAGGACACAUUUGCAUAUAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGGCACACGCGCAUCCGCAUC------AGCGUU .(((((((((((.(((((....))..(((((((((........((....((((....))))...)))))))))))......))).))))))...)))))...(((...------.))).. ( -36.40) >DroSim_CAF1 94249 114 - 1 AGCGCAGCCUCGAUAAUCACAGGACACAUUUGCAUAUAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGGCACACGCGCAUCCGCAUC------AGCGUU (((((.((((((.(((((....))..(((((((((........((....((((....))))...)))))))))))......))).))))))....(((....)))...------.))))) ( -34.00) >DroEre_CAF1 90934 120 - 1 AGCGCAGCCUCGAUAAUCACAGGACACAUUUGCAUACAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGACACACGCGCAUCCGCAUCCGCAUCCGCGUC .((((................(((..(((((((((........((....((((....))))...))))))))))).........(((.(.....).))).)))((....))....)))). ( -28.00) >DroYak_CAF1 93547 109 - 1 AGCGCAGCCUCGAUAAUCACAGGACACAUUUGCAUAUAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGGCACACGCGCAUUCGCAUCC----------- .((((.((((((.(((((....))..(((((((((........((....((((....))))...)))))))))))......))).))))))....))))..........----------- ( -31.30) >consensus AGCGCAGCCUCGAUAAUCACAGGACACAUUUGCAUAUAAACACGCUUCCGGGCUGAUGUCCUUCGCAUGCAAAUGAAAACAUUAGCGAGGCACACGCGCAUCCGCAUC______AGCGUC .((((.((((((.(((((....))..(((((((((........((....((((....))))...)))))))))))......))).))))))....(((....)))..........)))). (-28.12 = -29.20 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:52 2006