Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,355,569 – 11,355,682 |
Length | 113 |
Max. P | 0.701924 |
Location | 11,355,569 – 11,355,682 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.16 |
Mean single sequence MFE | -40.68 |
Consensus MFE | -37.96 |
Energy contribution | -38.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.17 |
Structure conservation index | 0.93 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11355569 113 - 27905053 UGGCAGUGUUCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGCCA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG ((((.((((((..........((((......))))(((((..(((((....))..))).-------.)))))..)))))).))))....(((.((((((.....)))).)).)))..... ( -40.50) >DroSec_CAF1 103146 113 - 1 UGGCAGUGUCCAACUUGUGUCGCUUGUUUUUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG ((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....(((.((((((.....)))).)).)))..... ( -42.30) >DroSim_CAF1 93904 113 - 1 UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG ((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....(((.((((((.....)))).)).)))..... ( -42.30) >DroEre_CAF1 90601 120 - 1 UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACAGCAGACAGCAGACACGGACAUGGCCAUAAAACGGUCCCAGUUUAUCGGGAGGGUGUUCGAG ((((.((((((.....(((((((((......))))(((((...(((....).))......)))))....))))))))))).))))....((..((((........))))..))....... ( -39.90) >DroYak_CAF1 93161 113 - 1 UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA-------GCAGACACGGACAUGGCCAUAAAACGGUCCCAGUUUAUCGGGAGGGUGUACGAG ((((.((((((.....(((((((((......))))(((((...((.....)).))))).-------...))))))))))).))))....((..((((........))))..))....... ( -38.40) >consensus UGGCAGUGUCCAACUUGUGUCGCUUGUUUAUGAGCGUCUGAAGGCCACGAGUGCAGACA_______GCAGACACGGACAUGGCCAUAAAACGGUCCCGGUUUAUCCGGAGGGUGUACGAG ((((.((((((.....(((((((((......))))(((((...((.....)).)))))...........))))))))))).))))....(((.((((((.....)))).)).)))..... (-37.96 = -38.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:50 2006