Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,547,991 – 1,548,092 |
Length | 101 |
Max. P | 0.828693 |
Location | 1,547,991 – 1,548,092 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -31.98 |
Consensus MFE | -18.75 |
Energy contribution | -18.95 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.15 |
Mean z-score | -1.97 |
Structure conservation index | 0.59 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1547991 101 + 27905053 UUGGGAGUUUCCUGCCU----------CAGUGGAGAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUUGUUAAAUGCGUUUUAGGCAUCAGGUCGCUCCACAUGGU---AGAAAU ......(((((.((((.----------..((((((.....(((((((((.(((..(((((..((.....))..)))))))).)))).)))))..))))))..)))---)))))) ( -34.10) >DroVir_CAF1 59878 92 + 1 CUGGCUGGCACCUCCCU----------U-----AAAAGUCGCCUGUGCCAAAAUUAUGCAAACAUUUGUUAAAUGCGUUUUGGGCAUCAGGUCCUUUC----GGC---AAAAAU ...(((((.........----------.-----..(((..(((((((((...(..((((((((....)))...)))))..).)))).))))).)))))----)))---...... ( -22.90) >DroPse_CAF1 49317 113 + 1 -UGCCGGCUGCCUGCCUUGCAAGGCCCUGGUGGAAAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUGGUUAAAUGCGUUUUGGGCAUCAGGUCCCUUCUCGUGCUCGUGGAAAU -.(((((..((((((...)).)))).))))).((.(((..(((((((((...(..(((((..((.....))..)))))..).)))).)))))..))).)).............. ( -34.30) >DroSim_CAF1 50216 100 + 1 -UGGGAGUUUCCUGCCU----------CAGUGGAAAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUUGUUAAAUGCGUUUUAGGCAUCAGGUCGCUCCACAUGGC---UCAAAU -.(((.....)))(((.----------..(((((...((.(((((((((.(((..(((((..((.....))..)))))))).)))).))))).)))))))..)))---...... ( -32.10) >DroAna_CAF1 47498 101 + 1 UUUCGUCUUUCCUACCU----------CAGCGGAAAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUUGUUAAAUGCGUUUUAGGCAUCAGGUCGCUCCGCAUGGU---GGAAAU .......(((((.(((.----------..(((((...((.(((((((((.(((..(((((..((.....))..)))))))).)))).))))).)))))))..)))---))))). ( -34.90) >DroPer_CAF1 50941 110 + 1 -UGGCGGCUGCCUGCCUUGCAAGGCCCUGGUGGAAAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUGGUUAAAUGCGUUUUAGGCAUCAGGUCCCUUCUCGUGCU---GGAAAU -...((((.(((.((((....))))...))).((.(((..(((((((((.(((..(((((..((.....))..)))))))).)))).)))))..))).))..)))---)..... ( -33.60) >consensus _UGGCAGUUUCCUGCCU__________CAGUGGAAAAGUCGCCUGUGCCAAAAUUAUGCAAAUAUUUGUUAAAUGCGUUUUAGGCAUCAGGUCCCUCCACAUGGU___GGAAAU .............................((((...((..(((((((((.(((..((((((((....)))...)))))))).)))).)))))..)))))).............. (-18.75 = -18.95 + 0.20)
Location | 1,547,991 – 1,548,092 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.73 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -15.28 |
Energy contribution | -14.92 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.14 |
Mean z-score | -1.95 |
Structure conservation index | 0.52 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1547991 101 - 27905053 AUUUCU---ACCAUGUGGAGCGACCUGAUGCCUAAAACGCAUUUAACAAAUAUUUGCAUAAUUUUGGCACAGGCGACUUCUCCACUG----------AGGCAGGAAACUCCCAA ......---..((.((((((((.((((.((((.((((.(((..((.....))..)))....))))))))))))))....))))))))----------.((.((....)).)).. ( -30.90) >DroVir_CAF1 59878 92 - 1 AUUUUU---GCC----GAAAGGACCUGAUGCCCAAAACGCAUUUAACAAAUGUUUGCAUAAUUUUGGCACAGGCGACUUUU-----A----------AGGGAGGUGCCAGCCAG ......---.((----(((((..((((.((((.((((.(((..((.....))..)))....))))))))))))...)))))-----.----------.))..(((....))).. ( -20.70) >DroPse_CAF1 49317 113 - 1 AUUUCCACGAGCACGAGAAGGGACCUGAUGCCCAAAACGCAUUUAACCAAUAUUUGCAUAAUUUUGGCACAGGCGACUUUUCCACCAGGGCCUUGCAAGGCAGGCAGCCGGCA- .......((.((..((((((...((((.((((.((((.(((..((.....))..)))....))))))))))))...)))))).......((((.((...)))))).))))...- ( -31.00) >DroSim_CAF1 50216 100 - 1 AUUUGA---GCCAUGUGGAGCGACCUGAUGCCUAAAACGCAUUUAACAAAUAUUUGCAUAAUUUUGGCACAGGCGACUUUUCCACUG----------AGGCAGGAAACUCCCA- ......---(((..((((((((.((((.((((.((((.(((..((.....))..)))....))))))))))))))....))))))..----------.)))((....))....- ( -29.90) >DroAna_CAF1 47498 101 - 1 AUUUCC---ACCAUGCGGAGCGACCUGAUGCCUAAAACGCAUUUAACAAAUAUUUGCAUAAUUUUGGCACAGGCGACUUUUCCGCUG----------AGGUAGGAAAGACGAAA .(((((---(((..((((((((.((((.((((.((((.(((..((.....))..)))....))))))))))))))....))))))..----------.))).)))))....... ( -32.90) >DroPer_CAF1 50941 110 - 1 AUUUCC---AGCACGAGAAGGGACCUGAUGCCUAAAACGCAUUUAACCAAUAUUUGCAUAAUUUUGGCACAGGCGACUUUUCCACCAGGGCCUUGCAAGGCAGGCAGCCGCCA- ....((---.....((((((...((((.((((.((((.(((..((.....))..)))....))))))))))))...)))))).....))((((....)))).(((....))).- ( -30.90) >consensus AUUUCC___ACCAUGAGAAGCGACCUGAUGCCUAAAACGCAUUUAACAAAUAUUUGCAUAAUUUUGGCACAGGCGACUUUUCCACUA__________AGGCAGGAAACACCCA_ ................((((...((((.((((.((((.(((..((.....))..)))....))))))))))))...)))).................................. (-15.28 = -14.92 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:49 2006