Locus 4204

Sequence ID 3R_DroMel_CAF1
Location 11,352,044 – 11,352,156
Length 112
Max. P 0.964870
window6780

overview

Window 0

Location 11,352,044 – 11,352,156
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.40
Mean single sequence MFE -38.10
Consensus MFE -31.08
Energy contribution -31.84
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -2.08
Structure conservation index 0.82
SVM decision value 1.57
SVM RNA-class probability 0.964870
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11352044 112 + 27905053
ACAAGCGUCCACAGCUGCUGCGGAAUGG--------CCAAAGGCGAUGGGGCAACGUGCGAGGUACUCGCGACUCUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGAAGGGAA
.......(((...((((((((.((.(((--------((...)))..(((((.....((((((...))))))..)))))....................)).)).))))))))....))). ( -35.30)
>DroSec_CAF1 94247 112 + 1
ACAAGCGUCCACAGCUGCUGCGGAAUGG--------CCAAAGGCGAUGUGGCAACGUGCGAGGUACUCGCGACUGUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGAAGGGAG
.......(((...((((((((.((.(((--------((...)))(((.(((((...((((((...))))))..))))).)))................)).)).))))))))....))). ( -38.30)
>DroSim_CAF1 90077 112 + 1
ACAAGCGUCCACAGCUGCUGCGGAAUGG--------CCAAAGGCGAUGUGGCAACGUGCGAGGUACUCGCGACUGUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGAAGGGAG
.......(((...((((((((.((.(((--------((...)))(((.(((((...((((((...))))))..))))).)))................)).)).))))))))....))). ( -38.30)
>DroEre_CAF1 87204 112 + 1
ACAAGCGUCCACAGCUGCUGCGGAAUGG--------CCCAAGGCGAAGUGGCAACGUGCGAGGCACUCGCGACUGUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGAAGGGGA
.......(((...((((((((.((.(((--------((...)))....(((((...((((((...))))))..)))))....................)).)).))))))))....))). ( -36.70)
>DroYak_CAF1 89560 120 + 1
ACAAGCGUCCACAGCUGCUGCGGAAUGGCUGCUACGCCCAAGGCGAAGUGGCAACGUGCGAGGUACUCGCGACUGUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGACAGGGA
.......(((...((((((((.((.((((..((.((((...)))).))..))...(((((((...))))).)).........................)).)).)))))))).....))) ( -41.90)
>consensus
ACAAGCGUCCACAGCUGCUGCGGAAUGG________CCAAAGGCGAUGUGGCAACGUGCGAGGUACUCGCGACUGUCAAAUUAAAUUAAUAAACACAACAAUUGGCGGCGGCGAAGGGAA
.......(((...((((((((.((..(((......)))......(((.(((((...((((((...))))))..))))).)))...................)).))))))))....))). (-31.08 = -31.84 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:34 2006