Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,350,924 – 11,351,038 |
Length | 114 |
Max. P | 0.574716 |
Location | 11,350,924 – 11,351,038 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -35.02 |
Consensus MFE | -25.70 |
Energy contribution | -26.84 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.03 |
Mean z-score | -1.67 |
Structure conservation index | 0.73 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11350924 114 - 27905053 GACAGGUAUUGCAUUUCAGCUGCACUGGGUCUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU ..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -35.00) >DroSec_CAF1 93153 114 - 1 GACAGGUAUUGCAUUUCAGCAGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU ..................((((((((((.....(((.....)))..((((((((((.......))))).)))))))))))))))(((((.(((((((...)))))))------))))).. ( -38.80) >DroSim_CAF1 88978 114 - 1 GACAGGUAUUGCAUUUCAGCUGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUCGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU ..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -35.00) >DroEre_CAF1 86125 114 - 1 GACAGGUAUUGCAUUUCAGCUGCACUGGGACCGAACACAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGCCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG------CAACUUU ..................((.((((((((......(((...)))...(((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))------))))).. ( -32.90) >DroYak_CAF1 88438 105 - 1 GACAGGUAUUGCAUUUCAGCUACACUGGGACUACUCAUAGAGUGAACUAGUUUC---------------ACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGGUGGUAUCAACUUU ..................((.(((((((...(((((...)))))..((((....---------------.))))))))))).))(((((.((((((((....))))))))...))))).. ( -33.40) >consensus GACAGGUAUUGCAUUUCAGCUGCACUGGGACUACACGUAGAGUGAACUAGUUUCGACUUGCUUUUGAAUACUGGCCAGUGUUGCAGUUGUCUAUCACUUGGUGGUGG______CAACUUU ..................((.(((((((.....(((.....)))..((((((((((.......))))).)))))))))))).))(((((.(((((((...)))))))......))))).. (-25.70 = -26.84 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:31 2006