Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,547,651 – 1,547,763 |
Length | 112 |
Max. P | 0.831018 |
Location | 1,547,651 – 1,547,763 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -15.66 |
Energy contribution | -15.69 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.68 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.831018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1547651 112 + 27905053 ---CGCUCUCUGCU--CUG--GCUGCUUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCCCCAUUCGCCAACCAAGUGACAAACCAUGUCCUGGCCUGAUCC ---.((.....))(--(.(--((((...(((...(((((((......((....)).((((..(((..............)))..))))...)))))))....)))...))))).))... ( -21.04) >DroVir_CAF1 59494 106 + 1 ---GGCCGCUUGGC--CUU----UCUCUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCUCAAUUCGCCAACCAAGUGACAAACCAGCA-G---AGCAAUCC ---((((....)))--)..----.((((......(((((((......((....)).((((..(((..............)))..))))...))))))).......)-)---))...... ( -22.96) >DroEre_CAF1 48641 103 + 1 -----------GCU--CUU--ACUGCGUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCCCAAUUCGCCAACC-AGUGACAAACCAUGUCCUGGCCUGAUCC -----------((.--...--...)).........((((........((((...((((((................)))))).)))).((-((.((((.....))))))))..)))).. ( -19.99) >DroWil_CAF1 50162 113 + 1 UCUGGCUU-UAGCC--CUGGCUCUGUGUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCCCAAUUCGCCAACCAAGUGACAAACCAACUCG---CUCGCUCU ...(((..-..)))--..(((...(((.......(((((((......((((...((((((................)))))).))))....)))))))........))---)..))).. ( -23.65) >DroYak_CAF1 44989 112 + 1 ---CGCUCUGCGCU--CUU--GCUGCGUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUAAAUCCCAAUUCGCCAACCAAGUGACAAACCAUGUCCUGGCCUGAUCC ---.(((..((((.--...--...))))......(((((((......((((...((((((................)))))).))))....)))))))...........)))....... ( -22.49) >DroAna_CAF1 47135 114 + 1 ---GGCGUCCCGCUCGCUC--CCCGCGCUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCCCAAUUCGCCAACCAAGUGACAAACCAAGUCCUGGCCGCCUCA ---((((.((.((((((..--...))).......(((((((......((((...((((((................)))))).))))....))))))).....)))...)).))))... ( -28.29) >consensus ___GGCUC_CCGCU__CUU__GCUGCGUUAUCCAUGUCACUCAAUUAUGGCAACAAUUGGUAAAUCCACUUCAAUCCCAAUUCGCCAACCAAGUGACAAACCAUGUCCUGGCCUGAUCC ..................................(((((((......((((...((((((................)))))).))))....)))))))..................... (-15.66 = -15.69 + 0.03)
Location | 1,547,651 – 1,547,763 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -21.83 |
Energy contribution | -22.17 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.66 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1547651 112 - 27905053 GGAUCAGGCCAGGACAUGGUUUGUCACUUGGUUGGCGAAUGGGGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAAAGCAGC--CAG--AGCAGAGAGCG--- ((...((((((.....))))))((((((..((((((((.((((((((......))))).)))....))))))..))..)))))).............)--)..--.((.....)).--- ( -31.20) >DroVir_CAF1 59494 106 - 1 GGAUUGCU---C-UGCUGGUUUGUCACUUGGUUGGCGAAUUGAGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAAGAGA----AAG--GCCAAGCGGCC--- ......((---(-(.......(((((((..((((((((.....(((((............))))).))))))..))..)))))))......)))).----..(--(((....))))--- ( -33.22) >DroEre_CAF1 48641 103 - 1 GGAUCAGGCCAGGACAUGGUUUGUCACU-GGUUGGCGAAUUGGGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAACGCAGU--AAG--AGC----------- ...((.((((((((((.....)))).))-)))).(((((((((................))))))((..(((....)).)..))........)))...--..)--)..----------- ( -26.69) >DroWil_CAF1 50162 113 - 1 AGAGCGAG---CGAGUUGGUUUGUCACUUGGUUGGCGAAUUGGGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAACACAGAGCCAG--GGCUA-AAGCCAGA .(.((.((---(...(((((((((((((..(((((((((((((................)))))..))))))..))..)))))).((.....))..)))))))--.))).-..)))... ( -34.89) >DroYak_CAF1 44989 112 - 1 GGAUCAGGCCAGGACAUGGUUUGUCACUUGGUUGGCGAAUUGGGAUUUAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAACGCAGC--AAG--AGCGCAGAGCG--- ..(((((((((.....))))))((((((..((((((((((((((((((....)))))..)))))..))))))..))..))))))...)))...((.((--...--.))))......--- ( -33.60) >DroAna_CAF1 47135 114 - 1 UGAGGCGGCCAGGACUUGGUUUGUCACUUGGUUGGCGAAUUGGGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAGCGCGGG--GAGCGAGCGGGACGCC--- ...((((.((....((.....(((((((..(((((((((((((................)))))..))))))..))..))))))).....))(((.(.--...)..))))).))))--- ( -37.69) >consensus GGAUCAGGCCAGGACAUGGUUUGUCACUUGGUUGGCGAAUUGGGAUUGAAGUGGAUUUACCAAUUGUUGCCAUAAUUGAGUGACAUGGAUAACGCAGC__AAG__AGCAA_AAGCC___ .....................(((((((..(((((((((((((((((......))))..)))))..))))))..))..))))))).................................. (-21.83 = -22.17 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:47 2006