Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 298,621 – 298,729 |
Length | 108 |
Max. P | 0.773277 |
Location | 298,621 – 298,729 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -21.84 |
Energy contribution | -22.08 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.92 |
Structure conservation index | 0.72 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 298621 108 - 27905053 UGAUGGCCGACAAGGGGUCAGAUUUGCAUUUGGCUGUGUAGAACAGAAAUCGA----------ACGAAAAGAAAGUAGCGAGCGCGGAGAACAUAAAAUCGUAUUUCCAGUUGGCCAA ...((((((((..((..((.(.(((((((......))))))).).))..))..----------..............((....))(((((((........)).))))).)))))))). ( -28.60) >DroSec_CAF1 34109 108 - 1 UGAUGGCCGGCAAGGGGUCAGAUUUGCAUUUGGCUGUGUAGAACAGAAAUCGA----------ACGAAAAGAAAGUAGCGAGCGCGGAGAAUAUAAAAUCGUAUUUCCAGUUGGCCAA ...((((((((..(..((..(((((..((((..((((((..........(((.----------((.........))..))))))))).))))...)))))..))..)..)))))))). ( -28.30) >DroSim_CAF1 35806 108 - 1 UGAUGGCCGACAAGGGGUCAGAUUUGCAUUUGGCUGUGUAGAACAGAAAUCGA----------ACGAAAAGAAAGUAGCGAGCGCGGAGAAUAUAAAAUCGUAUUUCCAGUUGGCCAA ...((((((((..(..((..(((((..((((..((((((..........(((.----------((.........))..))))))))).))))...)))))..))..)..)))))))). ( -28.80) >DroEre_CAF1 36672 111 - 1 ---UGGCCGACAAGGG-UCAUAUUUGCAUUUGGCUGUGUAGAACAGCAGCUGGCCG---CCGCUUGAAAAGAAAGUAGCGGGCGCGGAGAAUAUAAAACCGUAUUUCCAGUUGGCCAA ---((((((((.....-........((....((((((........))))))(.(((---(..(((.......)))..)))).)))(((((.(((......)))))))).)))))))). ( -42.70) >DroYak_CAF1 37903 108 - 1 UAAUGACCGACAAGGG-U---------AUCUGGCUGUGUAGAACAGAUAUCGACAAAAUCGAUUCGAAAAGAAAGUAGCGAACGCGGAGAAUAUAAAAUCGUAUUUCCAGUUGGCCAA ...((.(((((...((-(---------(((((...........))))))))...........(((.....)))....((....))(((((.(((......)))))))).))))).)). ( -23.10) >consensus UGAUGGCCGACAAGGGGUCAGAUUUGCAUUUGGCUGUGUAGAACAGAAAUCGA__________ACGAAAAGAAAGUAGCGAGCGCGGAGAAUAUAAAAUCGUAUUUCCAGUUGGCCAA ...((((((((......................((((.....))))...............................((....))(((((.(((......)))))))).)))))))). (-21.84 = -22.08 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:08 2006