Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,349,608 – 11,349,827 |
Length | 219 |
Max. P | 0.680595 |
Location | 11,349,608 – 11,349,716 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.90 |
Mean single sequence MFE | -39.00 |
Consensus MFE | -33.67 |
Energy contribution | -33.90 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.06 |
Mean z-score | -2.05 |
Structure conservation index | 0.86 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11349608 108 - 27905053 CGUCUGGUGGGCGCGGCGACGUCUGGUUCUGGCCACCAUGGCCAUCAUCAUCGUCAUCGCCACCAUGUAGAUUACCGCUUGCAAAGGCAUUGUCGCAACUCCAUCAUU ....(((((((.(((((((((..((((..(((((.....)))))..)))).))))...(((....(((((........)))))..)))...)))))...))))))).. ( -39.00) >DroSec_CAF1 91864 102 - 1 CGUCUGGUGGGCGCGGCGAUGUCUGGUUCUGGCCACCAUGGUCAU------CGUCAUCGCCACCAUGGAGAUUAUCGUUUGCAAAGGCAUUGUCGCAACUCCAUCAUU ....(((((((.(((((((((((((((....))).(((((((...------((....))..)))))))................))))))))))))...))))))).. ( -39.90) >DroSim_CAF1 87040 108 - 1 CGUCUGGUGGGCGCGGCGAUGUCUGGUUCUGGCCACCAUGGUCAUCAUCGUCGUCAUCGCCACCAUGGAGAUUAUCGUUUGCAAAGGCAUUGUCGCAACUCCAUCAUU ....(((((((.(((((((((((((((..(((((.....)))))..)))((((..(((.((.....)).)))...))...))..))))))))))))...))))))).. ( -38.10) >consensus CGUCUGGUGGGCGCGGCGAUGUCUGGUUCUGGCCACCAUGGUCAUCAUC_UCGUCAUCGCCACCAUGGAGAUUAUCGUUUGCAAAGGCAUUGUCGCAACUCCAUCAUU ....(((((((.((((((((((((.....(((((.....)))))........((.(((.((.....)).))).)).........))))))))))))...))))))).. (-33.67 = -33.90 + 0.23)
Location | 11,349,716 – 11,349,827 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.62 |
Mean single sequence MFE | -43.20 |
Consensus MFE | -30.66 |
Energy contribution | -30.78 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11349716 111 - 27905053 AAUCUGCAAAUUGUGCAUUUUUAAUGCAUUUCGUGUCUGCUGUUGCUG---CU------GCGUCCGCCCCCUUUAUUUUUCAUGGCCAAAGGGGGGGCGUGGCCCCAGGAGCAAUCAUGG ............((((((.....))))))..((((..((((.(((..(---(.------.((.((.((((((((.............))))))))))))..))..))).))))..)))). ( -42.62) >DroSec_CAF1 91966 110 - 1 AAUCUGCAAAUUGUGCAUUUUUAAUGCAUUUCGUGUCUGCUGCUGCUG---CU------GCGUCCGACCCCUUUAUU-UUCAUGGCCAAAGGGGGGGCGUGGCCCCAGGAGCAAUCAUGG ............((((((.....))))))..((((..((((.(((..(---(.------.(((((..(((((((...-.........))))))))))))..))..))).))))..)))). ( -43.60) >DroSim_CAF1 87148 117 - 1 AAUCUGCAAAUUGUGCAUUUUUAAUGCAUUUCGUGUCUGCUGCUGCUG---CUGCUGCAGCGUCCGCCCCCUUUAUUUUUCAUGGCCAAAGGGGGGGCGUGGCCCCAGGAGCAAUCAUGG ............((((((.....))))))..((((..((((.((((((---(....)))))(((((((((((((...............)))))))))).)))...)).))))..)))). ( -45.96) >DroYak_CAF1 87135 119 - 1 AAUCUGCAAAUUGUGCAUUUUUAAUGCAUUUCGUGUCUGCUGCUGCUGAUGCUGCUGCUACGUCCGCC-CCUUUAUUUUUCAUGGCCAAAGGGAGGGCGUGGCCCCAGGAGCAAUCAUGG .....(((....((((((.....))))))...(((((.((....)).)))))))).(((((((((..(-(((((.............)))))).))))))))).(((.((....)).))) ( -40.62) >consensus AAUCUGCAAAUUGUGCAUUUUUAAUGCAUUUCGUGUCUGCUGCUGCUG___CU______GCGUCCGCCCCCUUUAUUUUUCAUGGCCAAAGGGGGGGCGUGGCCCCAGGAGCAAUCAUGG ............((((((.....))))))..((((..((((.(((..............((((((..(((((((.............))))))))))))).....))).))))..)))). (-30.66 = -30.78 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:25 2006