Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,348,514 – 11,348,618 |
Length | 104 |
Max. P | 0.505045 |
Location | 11,348,514 – 11,348,618 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -39.88 |
Consensus MFE | -26.39 |
Energy contribution | -26.59 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.56 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11348514 104 - 27905053 UUCCGAUUCCUAGACCGAGACAGUAUCCUGG----------------GAUGCUGGGAUGGAAUGUCUGCUGGCAAACGAGGGCAUGGUUACACGUACCUGUGCGUCCUUGCCGGCUGUCA ............(((..(((((.(((((..(----------------....)..)))))...)))))(((((((((((.(((.(((......))).)))...)))..)))))))).))). ( -38.40) >DroSec_CAF1 87391 104 - 1 UUCCGAUUCCUAGACCGAGACAGUAUCCUGG----------------GAUGCUGGGACGGAAUGUCUGCUGGCAAACGAGGGCAUGGUUACACGUACCUGUGCGUCCUUGCCGGCUGUCA (((((..((((((.((.((........)).)----------------)...)))))))))))((.(.(((((((((((.(((.(((......))).)))...)))..)))))))).).)) ( -39.90) >DroSim_CAF1 85965 104 - 1 UUCCGAUUCCUAGACCGAGACAGUAUCCUGG----------------GAAGCUGGGACGGAAUGUCUGCUGGCGAACGAGGGCAUGGUUACACGUACCUGUGCGUCCUUGCCGGCUGUCA (((((..((((((.((.((........)).)----------------)...)))))))))))((.(.(((((((((((.(((.(((......))).)))...)))..)))))))).).)) ( -39.60) >DroEre_CAF1 83664 113 - 1 UUCCGAUUCCG------AAUUUGUAUCCCGGGAUUUUUAGGUGCUGGGCUGCUGGGAUGGAAUGUCAGCCGGCAAUUG-GGGCAUGGUUACACGUACCUGUGCGUCCUUGCCGGCUGCAA ((((.((((((------.....(((.(((((.(((....))).))))).)))))))))))))((.((((((((((..(-(((((((((.......))).)))).))))))))))))))). ( -49.50) >DroYak_CAF1 85937 111 - 1 UUCCAAUUCCGAAACCGAAUCUGUAUCCUGA--------AAUGCUGCGAUACUGGGAUAGAAUGUCUGCUGGCAAUCG-GGGCAUGGUUACACGUACCUGUGCCUCCUUGCCUGCUGCAA (((((....((....)).....((((((...--------......).)))))))))).....(((..((.(((((..(-(((((((((.......))).))))))).))))).)).))). ( -32.00) >consensus UUCCGAUUCCUAGACCGAGACAGUAUCCUGG________________GAUGCUGGGAUGGAAUGUCUGCUGGCAAACGAGGGCAUGGUUACACGUACCUGUGCGUCCUUGCCGGCUGUCA (((((..(((..........(((((((....................))))))))))))))).....((((((((....(.(((.(((.......)))))).)....))))))))..... (-26.39 = -26.59 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:15 2006