Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,348,151 – 11,348,252 |
Length | 101 |
Max. P | 0.658565 |
Location | 11,348,151 – 11,348,252 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.67 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -29.02 |
Energy contribution | -29.22 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11348151 101 + 27905053 AGCUUCAUUAUCGCA-AGUGCACACCGCAAUACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCGCCUGAUAU ....(((....(((.-.(..((((((.((((......))))))))))..)...------------------((((((((((.....)))..)))))))...........)))..)))... ( -31.70) >DroSec_CAF1 86991 102 + 1 UGCUUCAUUAUCGCAAAGUGCACACCGCCACACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCCCCCGAUAU ........(((((.......(((((((((..((....))..)))).)))))..------------------((((((((((.....)))..)))))))................))))). ( -29.10) >DroSim_CAF1 85565 101 + 1 CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGUUGGGUGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGACCCCGAUAU ........(((((..-.(..((((((.((((......))))))))))..)...------------------((((((((((.....)))..)))))))................))))). ( -32.90) >DroEre_CAF1 83271 101 + 1 CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGUUGGGCGUGUGUGAA------------------GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCGAGCCCCUGAUAU .((((.....((((.-...((((.((.((((......)))))).)))))))).------------------((((((((((.....)))..))))))).........))))......... ( -29.90) >DroYak_CAF1 85502 119 + 1 CGCUUCAUUAUCGCA-AGUGCACACCGCAACACUUCAGCUGGGUGUGUGUGAAGGAUGUGAUGGAUGUGAAGGAUGUGCGGAUAUCCCGGCCAUAUCCAUAUCCUCCGAGCCCCUGAUAU .((((.....((((.-...(((((((.((.(......).))))))))))))).(((....(((((((((..((((((....))))))....)))))))))....)))))))......... ( -37.80) >consensus CGCUUCAUUAUCGCA_AGUGCACACCGCAACACUUCAGUUGGGUGUGUGUGAA__________________GGAUGUGCGGAUAUUCCGGCCAUAUCCAUAUCCUCCCAGCCCCUGAUAU ........(((((....(..((((((.((((......))))))))))..).....................((((((((((.....)))..)))))))................))))). (-29.02 = -29.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:14 2006