Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,346,378 – 11,346,482 |
Length | 104 |
Max. P | 0.507859 |
Location | 11,346,378 – 11,346,482 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -17.42 |
Energy contribution | -17.46 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11346378 104 - 27905053 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAU---UUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGACCC ....-----.(((((((...(((...((((((.((((.---...)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.80) >DroSec_CAF1 85266 107 - 1 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUUUUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGAACC ....-----.(((((((...(((...((((((.((((.......)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.80) >DroSim_CAF1 83810 107 - 1 AUUG-----CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUUUUCUAUAUUU-UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA-------CAGAAAACAGACGACCC ....-----.(((((((...(((...((((((.((((.......)))).))-))))....)))...((((((....))))))..............-------.......)))))))... ( -23.50) >DroEre_CAF1 81579 92 - 1 AUAG-----CUCUUUUGAAACGGAGCUGGAAGCUGUACAUAUUUUU--------CAUUUGUCGCAUUGACACGUCAGUGUCAUUAAA-ACU--------------GAAAACAGGCGACCC .(((-----((((........)))))))..................--------.....(((((..((((((....)))))).....-.((--------------(....)))))))).. ( -25.90) >DroYak_CAF1 83677 120 - 1 AUUGGUCGUCUCGUUUGGAACGGAGCUGGAAGCUGUACAUAUUUUUUAUUUGUACAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACUGAAAAUAGAAAACAGAAAGCAGACGACCC ...(((((((((((.....)))..(((.....((((...(((((((..(((((((....)).))..((((((....))))))....)))..)))))))....))))..))))))))))). ( -32.50) >consensus AUUG_____CUCGUUUGAAACGGAGCUGGAAGCUGUAUAUAUUCUAUAUUU_UCCAUUUGUCGCAUUGACACGUCAGUGUCAUUAAAAACCGAAAA_______CAGAAAACAGACGACCC ..........(((((((....(.(((.....))).)..............................((((((....))))))............................)))))))... (-17.42 = -17.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:13 2006