| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,547,545 – 1,547,645 |
| Length | 100 |
| Max. P | 0.829298 |
| Location | 1,547,545 – 1,547,645 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.16 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -13.15 |
| Energy contribution | -12.71 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1547545 100 - 27905053 ACCGAGUUCGGAGCAAUAGAUUACAGAAAAGGUUCC---AUGCCACA----UUGUAAAAUGGCAACGGAGUACGGAAAUCUGCAUGAAAAUGCGAACAAAAGCCCAU .(((..((((((((.................)))))---.(((((..----........)))))...)))..))).....(((((....)))))............. ( -22.63) >DroPse_CAF1 48767 92 - 1 CCCAUGUUCUGUGCUAUUGAUUACAAAAAAGGUUCC---ACGCCA-----------AAAUGGCAACUG-GAAUGGAAAUCUGCAUGAAAAUGCAGACAAAAGCCCAU .........((.(((.(((............(((((---(.(((.-----------....)))...))-)))).....(((((((....)))))))))).))).)). ( -26.60) >DroEre_CAF1 48539 100 - 1 GCCGAGUUCGGGGCUAUUGAUUACAGAAAAGGUUCC---AUGCCACA----UUGUAAAAUGGCAACGGAGAACGGAAAUCUGCAUGAAAAUGCGAACAAAAGUCCAU .(((..((((..((((((..((((((....(((...---..)))...----))))))))))))..))))...))).....(((((....)))))............. ( -25.90) >DroWil_CAF1 50039 103 - 1 UCCAUGUCCCAGGCUAUUGAUUACAAAAAAGGUUCCUCCACGUUAAA----AUGGCAACUGGCAAAUGAAAAUGAAAAUCUGCAUGAAAAUGCAGACAAAAGCCCAU ..(((...((((((((((....((.....((....))....))...)----)))))..))))...)))..........(((((((....)))))))........... ( -22.70) >DroAna_CAF1 47018 104 - 1 CCCAUGUUCGGAGCUAUUGAUUACAGAAAAGGUUCC---AUGCCGCUUCAGUCGGGAAAUGGCAACUGAAAUUGAAAAUCUGCAUGAAAAUGCAAACAAAAGCCCGU ........(((.(((.(((....(((....((((((---((.((((....).)))...)))).))))....)))......(((((....)))))..))).)))))). ( -27.20) >DroPer_CAF1 50380 92 - 1 CCCAUGUUCUGUGCUAUUGAUUACAAAAAAGGUUCC---ACGCCA-----------AAAUGGCAACUG-GAAUGGAAAUCUGCAUGAAAAUGCAGACAAAAGCCCAU .........((.(((.(((............(((((---(.(((.-----------....)))...))-)))).....(((((((....)))))))))).))).)). ( -26.60) >consensus CCCAUGUUCGGAGCUAUUGAUUACAAAAAAGGUUCC___ACGCCACA____UUG__AAAUGGCAACUGAGAAUGGAAAUCUGCAUGAAAAUGCAAACAAAAGCCCAU ............(((.(((......................((((..............)))).................(((((....)))))..))).))).... (-13.15 = -12.71 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:45 2006