Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,344,111 – 11,344,220 |
Length | 109 |
Max. P | 0.571399 |
Location | 11,344,111 – 11,344,220 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -28.16 |
Energy contribution | -28.64 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.21 |
Structure conservation index | 0.91 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11344111 109 + 27905053 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCGUCGG ((((((.((((((((...(((......))).....)))..)))))------.)))).))..((((..(((.((((((..-----..)))))).......((.....))..)))..)))). ( -32.10) >DroSec_CAF1 82979 109 + 1 GGGGAAAUGCCUCAAAAGGUCAAAUUAGGCAUCCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCUUAGG ((((.....))))...........((((((..((((((.((((..------..)))).))))))...(((.((((((..-----..)))))).......((.....))..))))))))). ( -29.10) >DroSim_CAF1 81526 109 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAUCCAUUGUUGGGCA------AUUCCACCAGUGGCAGUGGCAGGAUGCU-----UGCAUCCUUUAAAAAACAUACAGUAACCAGCUUCGG ((((...((((.(.....(((......)))..((((((.((((..------..)))).))))))..).))))(((((..-----..))))).......................)))).. ( -31.50) >DroEre_CAF1 79226 105 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCG------AUU-CACGA---GCAGUGGCAGGAUGCC-----UGCAUCCUUUAAAAAACAUACAGUAACCGGCGUCGG ((((.....)))).....(((......)))..((((((((.(...------...-..).)---))))))).((((((..-----..))))))..................(((....))) ( -29.60) >DroYak_CAF1 81273 116 + 1 GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCUAAAUAAAUU-CACGA---GCAGUGGCAGGAUGCUUGCCUUGCAUCCUUUAAAAAACAUACAGUAACCAGCGGCGG ((((.....)))).....(((......)))..((.((((((((((........(-(((..---...)))).(((((((.......))))))).............)))..))))))).)) ( -32.10) >consensus GGGGAAAUGCCUCAAAAGGCCAAAUUAGGCAACCAUUGUUGGGCA______AUUCCACCAGUGGCAGUGGCAGGAUGCU_____UGCAUCCUUUAAAAAACAUACAGUAACCAGCGUCGG ((((.....)))).....(((......)))..((..((((((............((((........)))).(((((((.......)))))))..................))))))..)) (-28.16 = -28.64 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:55 2006