Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,342,558 – 11,342,653 |
Length | 95 |
Max. P | 0.894841 |
Location | 11,342,558 – 11,342,653 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -46.32 |
Consensus MFE | -30.26 |
Energy contribution | -32.26 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.65 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11342558 95 + 27905053 GGCAAAUGGCAGAGGCCGG-------AUGCCGGAUGCCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUCGCU------------------GAUGUCCUUGCUGGGCCUCAGCCAU .....(((((.((((((..-------..((((((((((....))))))))))..((..((((.(..(((....))).------------------.)))))..))...)))))).))))) ( -48.20) >DroSec_CAF1 81413 97 + 1 GGCAAAUUGCAGA--------------UGCCGUAUGCCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUCGCUGAUGUC---------GCUGAUGUCCUUGCUGGGCCUCAGCCAU (((......((((--------------((((((.......))))))))))((((((((.......((((....))))))))))---------))(((.((((.....)))).)))))).. ( -40.01) >DroSim_CAF1 79979 97 + 1 GGCAAAUGGCAGA--------------UGCCGGAUGCCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUCGCUGAUGUC---------GCUGAUGUCCUUGCUGGGCCUCAGCCAU (((....(((.(.--------------(((((((((((....))))))))))).)...((((.(..(((....)))..)))))---------)))((.((((.....)))).)).))).. ( -43.50) >DroEre_CAF1 77168 111 + 1 GGCAAAUGGCAGAUGCCGGAUGGCGGAUGCCGGAUGGCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUGGCUGAUGUC---------GCUGAUGUCCUGGCUGGGCCUCAGCCAU (((....(((.(.(((((((((.((..((((....))))..)).))))))))).).....(((((((((.((((((....)))---------)))..))))..))))).)))...))).. ( -47.20) >DroYak_CAF1 79082 113 + 1 GGCAAAUGGCAGAUGCCGG-------AUGCCGGAUGGCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUGGCUGAUGUCGCUGAUGUCGCUGAUGUCCUGGCUGGGCCUCAGCCAU (((......(((((((((.-------.((((....))))..)))))))))((((((((((((.(..((......))..)))))...))))))))(((.((((.....)))).)))))).. ( -52.70) >consensus GGCAAAUGGCAGA_GCCGG_______AUGCCGGAUGCCGGAUGGCGUCUGGUGACAUUGACAGUUGGCGGAGUCGCUGAUGUC_________GCUGAUGUCCUUGCUGGGCCUCAGCCAU (((....(((..................((((((((((....))))))))))((((((((((.(((((......)))))))))............))))))........)))...))).. (-30.26 = -32.26 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:50 2006