Locus 4184

Sequence ID 3R_DroMel_CAF1
Location 11,341,261 – 11,341,381
Length 120
Max. P 0.650098
window6730

overview

Window 0

Location 11,341,261 – 11,341,381
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -25.24
Consensus MFE -22.40
Energy contribution -22.64
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.26
Structure conservation index 0.89
SVM decision value 0.24
SVM RNA-class probability 0.650098
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11341261 120 + 27905053
AUUCCUGUUUCAUAAUCACAUUAUCCCCCAUUGGCAGGGGACAAAUUGACACAUCCUUUGGCGAAAGUACUCAACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAAGCGGACUUAA
..((((((.((....(((..((.(((((........))))).))..)))..((((((..(((....((........))....)))))))))...)).))..))))((.....))...... ( -25.50)
>DroSec_CAF1 80051 120 + 1
AUUCCUGUUUCAUAAUCACAUUAUCCCCCAUCGUCAGGGGACAAAUUGACACAUCCUUUGGCGAAAGUUCUCAACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAAGCGGACUUAA
..((((((.((....(((..((.(((((........))))).))..)))..((((((..(((....(((......)))....)))))))))...)).))..))))((.....))...... ( -26.20)
>DroSim_CAF1 78653 120 + 1
AUUCCUGUUUCAUAAUCACAUUAUCCCCCAUCGGCAGGGGACAAAUUGACACAUCCUUUGGCGAAAGUACUCAACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAAGCAAACUUAA
..((((((.((....(((..((.(((((........))))).))..)))..((((((..(((....((........))....)))))))))...)).))..))))............... ( -24.70)
>DroEre_CAF1 75811 120 + 1
AUUCCUGUUCCAUAAUCACAUUAUCCCCCAUCGGCAGGGGACAAAUUGACACAUCCUUUGGCAAAAGUACUCCACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAGGCGGACUUAA
...(((..(((....(((..((.(((((........))))).))..)))..((((((..(((....((........))....)))))))))...........)))...)))......... ( -25.00)
>DroYak_CAF1 77651 120 + 1
AUUCCUGUUUCAUAAUCACAUUAUCCUGCAUCGGCAGGGGACAAAUUGACACAUCCUUCGGCAAAAGUACUCCACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAAGCGGACUUAA
..((((((.((....(((.....((((((....)))))).......)))..((((((..(((....((........))....)))))))))...)).))..))))((.....))...... ( -24.80)
>consensus
AUUCCUGUUUCAUAAUCACAUUAUCCCCCAUCGGCAGGGGACAAAUUGACACAUCCUUUGGCGAAAGUACUCAACAACAACAGCCAGGAUGCCAGACACAAAGGACCAAAGCGGACUUAA
..((((((.((....(((..((.(((((........))))).))..)))..((((((..(((....((........))....)))))))))...)).))..))))............... (-22.40 = -22.64 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:46 2006