Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,338,921 – 11,339,039 |
Length | 118 |
Max. P | 0.825215 |
Location | 11,338,921 – 11,339,039 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -34.17 |
Consensus MFE | -27.42 |
Energy contribution | -28.30 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.16 |
Mean z-score | -1.84 |
Structure conservation index | 0.80 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11338921 118 - 27905053 UCCUUUUUACGCAU--CCAUUGUGGCCGGAACAAUCCCGGAAUUUAUUGACGGGAAAUGCAGACUUGGCAGAGCCUUCGCUGCUACUGCUUAUAAACAGAAGUAAAAAGUCUGUUGCCAU ..............--.....(((((........(((((..(.....)..)))))...(((((((((((((........)))))..(((((........)))))..)))))))).))))) ( -32.20) >DroSec_CAF1 77699 118 - 1 UCCUUUUUACGCAU--CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCUAU ((((..(((((((.--....)))).((((.......)))).......)))..))))..(((((((((((((.....)))))....((((((........)))))).))))))))...... ( -35.10) >DroSim_CAF1 76300 118 - 1 UCCUUUUUACGCAU--CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCUAU ((((..(((((((.--....)))).((((.......)))).......)))..))))..(((((((((((((.....)))))....((((((........)))))).))))))))...... ( -35.10) >DroYak_CAF1 75298 105 - 1 UCCUUUUUACGCAUUUCCAUUGCGGCAGCCACUUUCCCGGCAUUUAUUGACGGGGAAUGCAGACUUGGC---------------ACUGCUUACAAACCGAAGUAGGAAGUCUGUUGCCAU ..........(((.......)))((((.....(((((((.((.....)).))))))).((((((((...---------------.((((((........)))))).)))))))))))).. ( -34.30) >consensus UCCUUUUUACGCAU__CCAUUGUGGCCGGAACUUUCCCGGAAUUUAUUGACGGGGAAUGCAGACUUGGCGAAGCCUUCGCUGCUACUACUUAUAAACAGAAGUAGAAAGUCUGUUGCCAU ..........(((.......)))(((......(((((((...........))))))).(((((((((((((.....)))))....((((((........)))))).)))))))).))).. (-27.42 = -28.30 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:36 2006