Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,546,335 – 1,546,435 |
Length | 100 |
Max. P | 0.877666 |
Location | 1,546,335 – 1,546,435 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.62 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -16.54 |
Energy contribution | -17.10 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.81 |
Structure conservation index | 0.61 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1546335 100 + 27905053 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUAU-----------UAAGAUCCUU-----AAAAGGAUUCCCG---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGAA (((((((.((((..((((.....)))).-))))...)))))))...-----------....(((((.-----...)))))((((.---....(((((((.....)))))))....)))). ( -26.60) >DroSec_CAF1 47931 100 + 1 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUUU-----------UAAGAUCCUU-----GAAAGGAUUCCCA---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGGA (((((((.((((..((((.....)))).-))))...)))))))...-----------...((((((.-----...))))))(((.---....(((((((.....))))))).....))). ( -26.50) >DroSim_CAF1 48575 100 + 1 GAAGGACAAGAAUUAGAUGUGAAAUCUU-UUCUCAAGUUUUUUUUG-----------UAAGAUCCUU-----GAAAGGAUUCCCA---AAUAACCGUUAUAAAUUAGCGGUGCUAGGGGA (((((((.((((..((((.....)))).-))))...)))))))...-----------...((((((.-----...))))))(((.---....(((((((.....))))))).....))). ( -26.50) >DroEre_CAF1 47322 95 + 1 GAAGGACAA-GAUGAGAUGAGAAAUAUU-UUCUCAAGUUUCUU---------------AGGAUCCUU-----GAAAGGAUUCCCG---AAUAACCGUUAUAAAUUAGCGGUGGUGGGGAA .((((((..-..(((((((((((.....-))))))....))))---------------).).)))))-----.......((((((---....(((((((.....)))))))..)))))). ( -29.70) >DroYak_CAF1 43663 111 + 1 GAAGGACAACGAUGAGAUGAGAAACCUU-UUCUCAAGUUUUUUUUUCCUUGUAGAUUGAAGAUCCUU-----GAAAGGAUUCCAA---AAUAACCGUUAUAAAUUAGCGGUGGUAGGAAA .(((((.(((..(((((.(((....)))-.))))).))).)))))((((......(((..((((((.-----...)))))).)))---....(((((((.....)))))))...)))).. ( -26.70) >DroAna_CAF1 45829 109 + 1 GAAGGACAAGGAUUAGAUGGGAAAUCUUUUUCUUAAGUUUUUUUAU-----------UUGGGACUCUGAAAGGAAAGGAUUCUCAUGGAAUAACCGUUAUAAAUUAACGGUAUUAGAGCA ...........(((..(((((((.((((((((((.((((((.....-----------..))))))....)))))))))))))))))..))).(((((((.....)))))))......... ( -26.70) >consensus GAAGGACAAGAAUUAGAUGUGAAAUCUU_UUCUCAAGUUUUUUUUU___________UAAGAUCCUU_____GAAAGGAUUCCCA___AAUAACCGUUAUAAAUUAGCGGUGCUAGGGAA (((((((.((((..((((.....))))..))))...))))))).................(((((((.......)))))))(((........(((((((.....)))))))....))).. (-16.54 = -17.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:44 2006