Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,334,639 – 11,334,737 |
Length | 98 |
Max. P | 0.594029 |
Location | 11,334,639 – 11,334,737 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -16.63 |
Energy contribution | -17.97 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.70 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11334639 98 - 27905053 AU----------------GUAGAUAAGCUAUAAGCCUUAUCGAUGACAUAACAGUGAUUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU ((----------------((.(((((((.....).))))))....))))...(((((..(((((((((((((....))))))......)))))....))...)))))....... ( -19.00) >DroSec_CAF1 73871 113 - 1 AUAAGUGCACGUGAAACUGUAGAUAAGCUGUAAGCUUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGC-GCAUAUGUAUUCAUUAAUAAAU (((.((((..((((.(((((((....((((..........))))....)))))))...)))).(((((((((....))))))......)))-)))).))).............. ( -24.60) >DroSim_CAF1 72115 114 - 1 AUAAGUGCACGUGAAACAGUAGAUAAGCUGUAAGUCUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU ...((((((..((........(((..((((((((((........))).)))))))..))).(((((((((((....))))))......)))))))..))))))........... ( -27.50) >consensus AUAAGUGCACGUGAAAC_GUAGAUAAGCUGUAAGCCUUAUCGGUGAUAUUACAGUGAGUCACCGCAUAUUGAAAAUUCAAUACAUAUUUGCGGCAUAUGUAUUCAUUAAUAAAU ..................(((.(((.((((((((......(((((((..........)))))))..((((((....))))))....)))))))).))).)))............ (-16.63 = -17.97 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:28 2006