Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,334,257 – 11,334,405 |
Length | 148 |
Max. P | 0.779628 |
Location | 11,334,257 – 11,334,372 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -14.06 |
Energy contribution | -14.50 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.50 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11334257 115 - 27905053 UUUGAUUCAUAUUCCUGGGAAUAUCGAAUUUUCCAGGUAUUGCUAUGACCUUAAGUA----UAUUUACUGAAACA-CACUAAUAACUUUUUAGCUCUCCGGUUACUGGUACGAGGCUGCU .....(((.....((((((((........))))))))...((((((((((...((((----....))))......-..((((.......))))......))))).))))).)))...... ( -22.50) >DroSec_CAF1 73490 114 - 1 UUUGAAUCAUUUCCCUGGGAAUAUCGAAUUUUCCCGGGGUUGCUAUAACUUAAAGUA----UAUUUACUGAAACA-UACUAUU-ACCUUGUAGCUCUCCGGUUACUGGUACGAGGCUGCU ............(((((((((.........)))))))))..(((.........((((----(.(((....))).)-))))..(-(((..((((((....)))))).))))...))).... ( -29.30) >DroSim_CAF1 71734 114 - 1 UUUGAUUCCUUUCCCUGGGAAUAUCGAAUUUUCCCGGGGUUGCUAUAACCUAAAGUA----UAUUUACUGAAACA-UACUAUU-CCUUUUUAGCUCUCCGGUUACUGGUACGAGGCUGCU .......((((.(((((((((.........))))))))).((((((((((...((((----....))))......-..(((..-......)))......))))).))))).))))..... ( -28.00) >DroEre_CAF1 68991 109 - 1 UUUGGUACAU-UGCCUGGGAACUACUAUUUUUCCAGGGGUA-CUUUGACUUUAAAUA----UAUUUAUUCAAAUAACCCACC-----ACUUAGCUGUCAGGUUACUGGUACGAGGCGGCU ..((((....-...(((((((........)))))))((((.-.(((((...((((..----..)))).)))))..)))))))-----)...(((((((..((.......))..))))))) ( -28.00) >DroYak_CAF1 70805 114 - 1 UUUGAUUAAUUUCCCUGGGAACUACUAGUUUUCCAGGGGUAGCUUUGAUUUAAAAUAGAAAUAUACAUCGAAAUA-CACUAC-----ACUUAGCUUUCAGGCUACUGGUACGAGGCUGCC ............(((((((((........)))))))))(((((((((.......(((....)))...........-...(((-----...(((((....)))))...)))))))))))). ( -32.30) >consensus UUUGAUUCAUUUCCCUGGGAAUAUCGAAUUUUCCAGGGGUUGCUAUGACUUAAAGUA____UAUUUACUGAAACA_CACUACU__C_UUUUAGCUCUCCGGUUACUGGUACGAGGCUGCU ...........((((((((((........))))))))))..(((...(((..(((((....)))))........................(((((....)))))..)))....))).... (-14.06 = -14.50 + 0.44)
Location | 11,334,297 – 11,334,405 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.48 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -14.41 |
Energy contribution | -15.17 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.16 |
Mean z-score | -1.84 |
Structure conservation index | 0.57 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11334297 108 - 27905053 UCAACUUUAACCUAACGCAAGUGAGCGA-------AGAAAUUUGAUUCAUAUUCCUGGGAAUAUCGAAUUUUCCAGGUAUUGCUAUGACCUUAAGUA----UAUUUACUGAAACA-CACU ................((((((((((((-------(....)))).)))))...((((((((........))))))))..))))..........((((----....))))......-.... ( -23.00) >DroSec_CAF1 73529 108 - 1 UCAACUUAAACCUGACGCGAGUGAGUUA-------AGAAGUUUGAAUCAUUUCCCUGGGAAUAUCGAAUUUUCCCGGGGUUGCUAUAACUUAAAGUA----UAUUUACUGAAACA-UACU ....(((((..((.((....)).)))))-------))(((((.....((...(((((((((.........))))))))).))....)))))..((((----....))))......-.... ( -27.50) >DroSim_CAF1 71773 108 - 1 UCCACUUAAACCUAACGCGAGUGAGUGA-------AGAAGUUUGAUUCCUUUCCCUGGGAAUAUCGAAUUUUCCCGGGGUUGCUAUAACCUAAAGUA----UAUUUACUGAAACA-UACU ..((((((..((....).)..)))))).-------...(((.((.(((....(((((((((.........)))))))))..............((((----....))))))).))-.))) ( -26.60) >DroEre_CAF1 69026 114 - 1 UUAACUUUAACCUGACGCGAGUGAGUAAAACCAGUACAAGUUUGGUACAU-UGCCUGGGAACUACUAUUUUUCCAGGGGUA-CUUUGACUUUAAAUA----UAUUUAUUCAAAUAACCCA ..............((....))(((((((........(((((.(((((..-..((((((((........)))))))).)))-))..)))))......----..))))))).......... ( -25.19) >DroYak_CAF1 70840 113 - 1 UGAACUUUAACCUGACGCGAGUGAGUAA------UACAAAUUUGAUUAAUUUCCCUGGGAACUACUAGUUUUCCAGGGGUAGCUUUGAUUUAAAAUAGAAAUAUACAUCGAAAUA-CACU ...........((.((....)).))...------..................(((((((((........)))))))))(((..((((((.....(((....)))..)))))).))-)... ( -23.50) >consensus UCAACUUUAACCUGACGCGAGUGAGUAA_______AGAAGUUUGAUUCAUUUCCCUGGGAAUAUCGAAUUUUCCAGGGGUUGCUAUGACUUAAAGUA____UAUUUACUGAAACA_CACU ...........((.((....)).))............(((((.........((((((((((........)))))))))).......)))))............................. (-14.41 = -15.17 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:27 2006